Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 795 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  567 bits (1461), Expect = e-166
 Identities = 308/811 (37%), Positives = 458/811 (56%), Gaps = 26/811 (3%)

Query: 3   MKQILLATLLATSVSAN-GAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVAN 61
           MK++LL  +L   + A   AE F + DI+++GLQRV+ G+    +P+ VG+  D + +  
Sbjct: 1   MKRLLLTAVLTVLMIAEVHAESFTISDIRVNGLQRVSAGSVFGALPLNVGEQADDRRLVE 60

Query: 62  IIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRV 121
             +AL+ +G F+D+++ R+GN L++ V ERP++AS+   GNKAI  E L + L+ S +  
Sbjct: 61  STRALFKTGFFQDIQLGREGNVLVITVVERPSVASIEIEGNKAISTEDLMKGLKQSGLAE 120

Query: 122 GEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQIN 181
           GE   R TL  +   L+  Y + G+Y+ATV+  V P PRNR  LK    EG  A IQ IN
Sbjct: 121 GEIFQRATLEGVRNELQRQYVAQGRYSATVETEVVPQPRNRVGLKVNINEGTVAAIQHIN 180

Query: 182 FIGNQVFSDEELLSRFNLNVDVAWWNFLA-DDKYKKQVLAGDIEALRTYYLDRGYLKFQV 240
            +GN  F+DE+L+  F L     W +F   DDKY ++ L+GD+E LR+YYLDRGY+   +
Sbjct: 181 VVGNTKFADEDLIDLFELKT-TNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDI 239

Query: 241 DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSA 300
            STQV+I+PDKK VYIT+N+NEGE Y V  V+  G+L   E +  +L+  +  + ++   
Sbjct: 240 ASTQVSITPDKKHVYITVNVNEGEKYKVRDVKLSGDLKVPEDQVKALLLVQKDQVFSRKL 299

Query: 301 VTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNST 360
           +T   E + + LG  GY +  V  +P   D+   V +   V+ GKR YV  I F GN  +
Sbjct: 300 MTTTSELITRRLGNEGYTFANVNGVPTPHDDDHTVDITFVVDPGKRAYVNRINFRGNTKS 359

Query: 361 RDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKE 420
            DEVLRREMRQMEG W ++  I+  KTRL RLGFF+ V V+T  VPG +DQVD+ Y+V+E
Sbjct: 360 ADEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPAVPGVDDQVDVNYAVEE 419

Query: 421 ANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL 480
             SG++   VG+   +G+     + Q+NFLG+GNRV +    ++YQ      Y DPYW  
Sbjct: 420 QASGSITASVGFAQSAGLILGGSITQNNFLGTGNRVSIGLTRSEYQSRYNFGYTDPYWTA 479

Query: 481 DGVSLGGKVFY--NQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGN 538
           DGVSLG   FY    ++  +  +  Y  +S G  +  G+P  E +R  FG+    ++I  
Sbjct: 480 DGVSLGYNAFYRTTDYKDLDVDVASYAIDSLGAGVNVGYPISETSRLTFGLTAQQDEI-- 537

Query: 539 LTPYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTV 598
            T    V+          D   N     F  +  W+ + LN     T G+ Q    + T 
Sbjct: 538 KTGVYTVDEIFDFTRREGDKFLN-----FKASAGWSESTLNKGVLATRGHSQSLTLETTT 592

Query: 599 PGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGG 658
           PGSD  +FKL Y  + + PL+    +T+ L   LGYG+GYG T+G     PFYEN+YAGG
Sbjct: 593 PGSDLSFFKLDYRGQLFTPLS--DNYTMRLHTELGYGDGYGSTNG----LPFYENYYAGG 646

Query: 659 FTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDS-----VGGNAIALASVELIVPTPFA 713
           F S+RGF  ++ GP+       G      T  D        GGN +     E++ P PF 
Sbjct: 647 FNSVRGFKDSTLGPRGTPSRGVGVTGNQGTVADSDNDPLPFGGNVLIQGGAEILFPLPFV 706

Query: 714 SEEARNQIRTSIFYDMASVWDTEFD-YRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSP 772
            ++    +RTS+F+D+ +V+D++ +  +  +   +    +    +N  SS GV + WV+ 
Sbjct: 707 KDQ--RSLRTSVFWDVGNVFDSKCEQIKNPSGVKSNTQCNDVSLSNLASSVGVGVTWVTA 764

Query: 773 MGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           +GPL F+LA PIKK +  + + F F++G+TF
Sbjct: 765 LGPLSFALAMPIKKPDNAETQIFQFSLGQTF 795