Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., Outer membrane component of TAM transport system from Sphingobium sp. HT1-2

 Score = 70.1 bits (170), Expect = 4e-16
 Identities = 116/575 (20%), Positives = 201/575 (34%), Gaps = 111/575 (19%)

Query: 256 ITLNLNEGEPYTVSKVQFRG--ELMGKEAEFTSLIPFEIGETYNGSAVTRLEESVKKVLG 313
           +  ++  G  Y +  V+  G  E   +E         + G+  N   +   + ++   LG
Sbjct: 143 VIFDVTPGPLYVLDTVEIAGLAETGPREETLRGAFTMKSGDPINADRILAGQTALATALG 202

Query: 314 ESGYAYPQVRTIPE--FDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQ 371
           E+GY + +V   PE   D E +   L + V  G       I    ++      L+R  R 
Sbjct: 203 ENGYPFARVDE-PEVRIDHEARNGDLDIIVTPGGYRSFGQILLDNDDVFSARHLQRMARF 261

Query: 372 MEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNFGVG 431
             G    + D+E  +  +   G   +V + T +  G  + VDL   ++ A    +   +G
Sbjct: 262 EPGETYRATDVEDLRRAIVTTGLVSSVTL-TPKDAGDGEHVDLDVDLRPAPMRTIAGELG 320

Query: 432 YGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGKVFY 491
           YGT  G   +V  Q  N       + +  ++   ++     YR   +      L G V Y
Sbjct: 321 YGTGEGYRAEVSWQHRNLFPPEGSLTLRGVLGTQEQTAQATYRRNNFRERDHVLTGLVSY 380

Query: 492 NQFEAS---------EAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPY 542
           +                G+   TN  +     W                   ++G     
Sbjct: 381 SNIRRDAYDARTITLSGGLERQTNILFQKHWVW-------------------RVG----- 416

Query: 543 LQVENFLAAQASNIDSGGNLLTDDFD-INLSWTRNNLNNSYFPTAGNH--QRAFYKMTVP 599
                 +A+  ++  SGG+  T     + LS T +  ++   P+ G     R   +++  
Sbjct: 417 ---AELIASDEADAFSGGSRRTFLIGAVPLSLTYDGSDDLLNPSKGFRLGGRLSPELSFQ 473

Query: 600 GSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGF 659
           GS   Y K Q D   Y P+  +    ++L GR   G   G T   D + P    FYAGG 
Sbjct: 474 GSTFGYAKAQVDASAYQPINDR----VVLAGRTRLGTILGST--VDRIAP-SRRFYAGGG 526

Query: 660 TSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARN 719
            S+RG+G  + GP+           G D   DD VGG ++                    
Sbjct: 527 ASVRGYGYQAIGPR----------YGPD---DDPVGGKSL-------------------- 553

Query: 720 QIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSY-----------GVALQ 768
                           EF    +  +GN     + D  N  +++           G+ ++
Sbjct: 554 ---------------IEFSAEARIRFGNFGVVPFLDAGNISTTFLPRFRDLRVGTGLGVR 598

Query: 769 WVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           + S  GP+   +  PI    GD +     ++G+ F
Sbjct: 599 YYSSFGPIRVDVGTPINPQPGDAKVAVYVSLGQAF 633