Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., outer membrane protein assembly factor from Pseudomonas putida KT2440

 Score =  570 bits (1470), Expect = e-167
 Identities = 312/811 (38%), Positives = 466/811 (57%), Gaps = 32/811 (3%)

Query: 1   MAMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVA 60
           M   ++LL+ LL  +  A  A  F + DI+++GLQRV+ G+    +P+ VGD  D + + 
Sbjct: 1   MNYPRLLLSILLLKATLAQ-ASPFRIADIRVNGLQRVSAGSVFGALPLNVGDQADDRRLV 59

Query: 61  NIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR 120
           +  ++L+ +G F+D+++ RDGN L++ V ERP+++S+   GNKAI  E L + L+ S + 
Sbjct: 60  DSTRSLFKTGFFQDIQLSRDGNVLIINVVERPSVSSIEIEGNKAISTEDLMKGLKQSGLA 119

Query: 121 VGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQI 180
            GE   R TL  +   L+  Y + G+Y+A V A V P PRNR  LK    EG  A IQ I
Sbjct: 120 EGEIFQRATLEGVRNELQRQYVAQGRYSAEVDAEVVPQPRNRVALKIKINEGTVAAIQHI 179

Query: 181 NFIGNQVFSDEELLSRFNLNVDVAWWNFLA-DDKYKKQVLAGDIEALRTYYLDRGYLKFQ 239
           N +GN VF DE L   F L     W +F   DDKY ++ L+GD+E LR+YYLDRGY+   
Sbjct: 180 NIVGNNVFDDETLGQLFELKT-TNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMD 238

Query: 240 VDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGS 299
           + STQV+I+PDKK VYIT+N+NEGE YTV  V+  G+L   E +  SL+  + G+ ++  
Sbjct: 239 IASTQVSITPDKKHVYITVNINEGEKYTVRDVKLSGDLKVPEDQVKSLLLVQPGQVFSRK 298

Query: 300 AVTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNS 359
            +T   E + + LG  GY +  V  +P+ +D+   V ++  V+ GKR YV  I + GN  
Sbjct: 299 VMTTTSELITRRLGNEGYTFANVNGVPQPNDQDHTVDIMFVVDPGKRAYVNRINYRGNTK 358

Query: 360 TRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVK 419
           T DEVLRREMRQMEG W ++  I+  KTRL RLGFF+ V V+T +VPG++DQVD+ YSV+
Sbjct: 359 TEDEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPQVPGTDDQVDVNYSVE 418

Query: 420 EANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWN 479
           E  SG++   VG+   +G+     + Q NFLG+GN+V +    ++YQ      + DPY+ 
Sbjct: 419 EQASGSITASVGFAQSAGLILGGSISQSNFLGTGNKVSIGLTRSEYQTKYNFGFVDPYFT 478

Query: 480 LDGVSLGGKVFYNQFEAS---EAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKI 536
            DGVSLG  +FYN  + S   + G+  Y   SYG  +++G+P +E +R  +G+   H+ I
Sbjct: 479 ADGVSLGYNLFYNSTDYSDYYDDGVSYYAINSYGAGVSFGYPINETSRLTYGLTLQHDDI 538

Query: 537 GNLTPYL-QVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYK 595
              T    ++ +F++ +  +         ++   ++ W+ + LN     T G+ Q     
Sbjct: 539 SPGTYSADEIYDFISREGKSF--------NNLKASIGWSESTLNKGVLATRGHSQSLTLM 590

Query: 596 MTVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFY 655
            T PGSD  ++KL Y+ + + P+T     TL L   LGYGNGYG TDG     PFYE++ 
Sbjct: 591 ATTPGSDLSFYKLDYNGQAFLPVTS--NTTLRLHTNLGYGNGYGSTDG----LPFYESYN 644

Query: 656 AGGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATD---DSVGGNAIALASVELIVPTPF 712
           AGG  S+RGF   + GP++     + SN G    +D   D +GGN +     E + P PF
Sbjct: 645 AGGQGSVRGFKDGTLGPRSTPATGAYSNAGQAYYSDRDTDVLGGNILITGGAEYLFPLPF 704

Query: 713 ASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSP 772
             ++  +Q+R+S+F D  +V+            G+       D      S GV + W SP
Sbjct: 705 VKDQ--SQLRSSVFVDAGNVYADTCYLSTTQGCGS------VDLAQMAVSLGVGVTWYSP 756

Query: 773 MGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           MGPL FSLA P+KK +  + + F F++G+TF
Sbjct: 757 MGPLSFSLAAPLKKPDNAETQVFQFSLGQTF 787