Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 786 a.a., outer membrane protein assembly factor from Pseudomonas putida KT2440

 Score =  587 bits (1513), Expect = e-172
 Identities = 318/812 (39%), Positives = 476/812 (58%), Gaps = 37/812 (4%)

Query: 3   MKQILL-ATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVAN 61
           MK++LL A + A  ++   AE F + DI+++GLQRV+ G+    +P+ VGD  D + + +
Sbjct: 1   MKRLLLTAVMSALMIAEVHAESFTISDIRVNGLQRVSAGSVFGALPLNVGDQADDRRLVD 60

Query: 62  IIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRV 121
             ++L+ +G F+D+++ RDGN L++ V ERP+++S+   GNKAI  E L + L+ S +  
Sbjct: 61  STRSLFKTGFFQDIQLSRDGNVLIINVVERPSVSSIEIEGNKAISTEDLMKGLKQSGLAE 120

Query: 122 GEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQIN 181
           GE   R TL  +   L+  Y + G+Y+A V A V P PRNR  LK    EG  A IQ IN
Sbjct: 121 GEIFQRATLEGVRNELQRQYVAQGRYSAEVDAEVVPQPRNRVALKIKINEGTVAAIQHIN 180

Query: 182 FIGNQVFSDEELLSRFNLNVDVAWWNFLA-DDKYKKQVLAGDIEALRTYYLDRGYLKFQV 240
            +GN VF DE L   F L     W +F   DDKY ++ L+GD+E LR+YYLDRGY+   +
Sbjct: 181 IVGNNVFDDETLGQLFELKT-TNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDI 239

Query: 241 DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSA 300
            STQV+I+PDKK VYIT+N+NEGE YTV  V+  G+L   E +  SL+  + G+ ++   
Sbjct: 240 ASTQVSITPDKKHVYITVNINEGEKYTVRDVKLSGDLKVPEDQVKSLLLVQPGQVFSRKV 299

Query: 301 VTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNST 360
           +T   E + + LG  GY +  V  +P+ +D+   V ++  V+ GKR YV  I + GN  T
Sbjct: 300 MTTTSELITRRLGNEGYTFANVNGVPQPNDQDHTVDIMFVVDPGKRAYVNRINYRGNTKT 359

Query: 361 RDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKE 420
            DEVLRREMRQMEG W ++  I+  KTRL RLGFF+ V V+T +VPG++DQVD+ YSV+E
Sbjct: 360 EDEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPQVPGTDDQVDVNYSVEE 419

Query: 421 ANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL 480
             SG++   VG+   +G+     + Q NFLG+GN+V +    ++YQ      + DPY+  
Sbjct: 420 QASGSITASVGFAQSAGLILGGSISQSNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYFTA 479

Query: 481 DGVSLGGKVFY--NQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKI-- 536
           DGVSLG   FY    ++  +  +  Y  +SYG  ++ G+P  E +R  +G+    +KI  
Sbjct: 480 DGVSLGYNAFYRSTDYDDLDVDVASYAVDSYGAGVSLGYPISETSRLTYGLSVQQDKIKT 539

Query: 537 GNLTPYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKM 596
           G  T   ++ +FL       + G N L  +F  ++ W+ + LN     T G+ Q    + 
Sbjct: 540 GKYT-VDEIFDFLE------EEGDNFL--NFKASIGWSESTLNKGVLATRGHSQSLTLES 590

Query: 597 TVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYA 656
           TVPGSD  +FKL Y  + + P+T   ++TL L   LGYG+GYG T G     PFYEN++A
Sbjct: 591 TVPGSDLSFFKLDYRGQLFKPITS--DYTLRLHTELGYGDGYGSTSG----LPFYENYFA 644

Query: 657 GGFTSLRGFGSNSAGPKAV--YRDYSGSNNGSDTATDDS---VGGNAIALASVELIVPTP 711
           GGF S+RGF  +S GP++     + +G   G+    D      GGN +     EL+ P P
Sbjct: 645 GGFNSVRGFKDSSLGPRSTPSIGEAAGGKPGTIADPDQDPLPFGGNVLVQGGAELLFPLP 704

Query: 712 FASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVS 771
           F  ++    +RTS+F+D+ +V+DT        + GN+   +    +   SS G+ + W++
Sbjct: 705 FVKDQ--RSLRTSVFWDVGNVFDT--------NCGNKPDCEKVGFSGMASSVGLGVTWIT 754

Query: 772 PMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
            +GPL FSLA P+KK +  D + F F++G+TF
Sbjct: 755 ALGPLSFSLAMPVKKPDDADTQVFQFSLGQTF 786