Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., Outer membrane protein from Enterobacter asburiae PDN3

 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 117/560 (20%), Positives = 211/560 (37%), Gaps = 96/560 (17%)

Query: 249 PDKKGVYITL-NLNEGEPYTV--SKVQFRGELMGKEAEFTSLIPF--EIGETYNGSAVTR 303
           P KKG  + +  ++ GEP  +  + V  RG     + ++  L+    +IG   N      
Sbjct: 86  PPKKGRQVLIARVSPGEPVLIGGTNVILRGGAR-TDRDYLDLLSTRPKIGTVLNHGDYDH 144

Query: 304 LEESVKKVLGESGYAYPQV-RTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRD 362
            ++ +  V    GY   Q  ++      +++Q    +  ++G+R    D+ F G+   R+
Sbjct: 145 FKKELTNVSLRKGYFDSQFNKSQLGIALDRRQAFWDIDYDSGERYRFGDVTFEGSQ-IRE 203

Query: 363 EVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEAN 422
           E L+  +   +G +  S+D+     RL+  G+F +V V        + +V  ++ V    
Sbjct: 204 EYLQNLVPFKKGDYYQSRDLAELNRRLSATGWFNSVVVAPEFEKSRKTKVLPLHGVVSPR 263

Query: 423 SGN-VNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLD 481
           + N +  GVGY T+ G   +   ++      G+ +  +  ++  ++ L   Y+ P   L 
Sbjct: 264 TENTIETGVGYSTDVGPRVRTSWKKPWMNSYGHSLTTSLSLSAPEQQLDFSYKMPL--LK 321

Query: 482 GVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTP 541
                  +    F+ ++       + +   S  W          E   G+   +  NL  
Sbjct: 322 NPLEQYYLVQGGFKRTDLNDTKQDSTTLAVSRFW----------ELSSGW--QRAINLR- 368

Query: 542 YLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQR--AFYKMTVP 599
              +++F  A  +N      LL     I+ + +R  L     PT G+ QR    Y  +  
Sbjct: 369 -WSLDHFTQANVTNTTM---LLYPGVMISRTRSRGGL----MPTWGDSQRYSIDYSNSAW 420

Query: 600 GSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGF 659
           GSD  +  LQ        L  KH F  ++RG LG+        G     P    F+AGG 
Sbjct: 421 GSDVDFSVLQAQNVWIRTLYDKHRF--VMRGNLGW-----IETGDFERVPPDLRFFAGGD 473

Query: 660 TSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARN 719
            S+RG+   S  P+        +  G  T      G + +A  S+               
Sbjct: 474 RSIRGYKYKSISPE--------NEKGQLT------GASKLATGSL--------------- 504

Query: 720 QIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTN------YRSSYGVALQWVSPM 773
                           E+ Y     +    + D  +  N      +++  GV ++W SP+
Sbjct: 505 ----------------EYQYNVSGKWWGAMFVDGGEAVNDIRRSDFKTGAGVGVRWQSPV 548

Query: 774 GPLVFSLAKPIKKYEGDDEE 793
           GP+    A P+    GD EE
Sbjct: 549 GPIKLDFAVPV----GDKEE 564



 Score = 45.8 bits (107), Expect = 7e-09
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 20/237 (8%)

Query: 110 LKQNLEA--SSIRVGEAL-DRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRN-RADL 165
           L++N+ A  S+I+  E   DR   + ++  + +   ++G Y  T+   + P P+  R  L
Sbjct: 35  LQKNVRAQLSTIQSDEVTPDRRFRARVDDAIREGLKALGYYEPTIDFDLRPPPKKGRQVL 94

Query: 166 KFVFTEGVSAKIQQINFI-GNQVFSDEELLSRFNLNVDVAWWNFLAD-DKYKKQVLAGDI 223
               + G    I   N I      +D + L   +    +       D D +KK+      
Sbjct: 95  IARVSPGEPVLIGGTNVILRGGARTDRDYLDLLSTRPKIGTVLNHGDYDHFKKE------ 148

Query: 224 EALRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAE 283
             L    L +GY   Q + +Q+ I+ D++  +  ++ + GE Y    V F G  + +E  
Sbjct: 149 --LTNVSLRKGYFDSQFNKSQLGIALDRRQAFWDIDYDSGERYRFGDVTFEGSQI-REEY 205

Query: 284 FTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVH 340
             +L+PF+ G+ Y    +  L     + L  +G+ +  V   PEF+  ++   L +H
Sbjct: 206 LQNLVPFKKGDYYQSRDLAEL----NRRLSATGW-FNSVVVAPEFEKSRKTKVLPLH 257