Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 825 a.a., Outer membrane protein assembly factor BamA precursor from Alteromonas macleodii MIT1002

 Score =  822 bits (2124), Expect = 0.0
 Identities = 399/829 (48%), Positives = 574/829 (69%), Gaps = 30/829 (3%)

Query: 1   MAMKQILLATLLATSVS-ANGA---EKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDS 56
           M +KQ++ A  + +S S AN A    +FVV+DI+++GLQRVALGAAL  +PV+VGD +++
Sbjct: 1   MKLKQLVAAGAILSSASFANAAAQDSEFVVEDIRVEGLQRVALGAALTYLPVQVGDELNT 60

Query: 57  QDVANIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEA 116
             V  +I++LYSS +FE+V++LRDGNTL+V+V ERPTI+++ F GN  IK+EQL+++L+ 
Sbjct: 61  FRVTQLIRSLYSSTHFENVEILRDGNTLVVRVAERPTISNIIFEGNDDIKDEQLQESLDG 120

Query: 117 SSIRVGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAK 176
           + +R+GE LD+T L++IE GL+DF+YS+GKYNA V A++TPLPRNR DLK +F EG +A+
Sbjct: 121 NGVRIGEPLDKTVLTSIENGLKDFFYSIGKYNADVTAIITPLPRNRVDLKLLFEEGDAAE 180

Query: 177 IQQINFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYL 236
           I+QIN +GN++FSDEEL+  F L  D  WW+FL++ +Y++Q L GD+E LR +YL+RGYL
Sbjct: 181 IEQINIVGNEIFSDEELMEAFELQYDTPWWDFLSETRYQQQTLQGDMETLRNHYLNRGYL 240

Query: 237 KFQVDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETY 296
           +F VDSTQV+++P+K G+YI +N+ EGE YT+S+V+  G+++G E     ++P   GE Y
Sbjct: 241 RFNVDSTQVSMTPEKSGIYIAMNVTEGEQYTISEVELVGDVLGHEEYIERVLPLTEGELY 300

Query: 297 NGSAVTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVG 356
           N + VT  EE + K LG  GYAYP V T+PE +DE + V L + V+ GKR+YV  I+F G
Sbjct: 301 NQAEVTYTEEFISKYLGRFGYAYPTVTTVPEINDEDKTVKLTLSVDPGKRIYVNRIKFNG 360

Query: 357 NNSTRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVY 416
           N  T D VLR+ + QMEG+WL++  +E+ K +L+RL + E VE +TVR+PGSED+VD+ Y
Sbjct: 361 NVVTADSVLRQNVSQMEGTWLSNNLLESSKNQLSRLTYMEEVEYETVRIPGSEDKVDVNY 420

Query: 417 SVKEANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDP 476
           +VKE  SG+ N G+GYG  + +S Q G+QQDNFLG+G RVG+N     YQ++  + Y DP
Sbjct: 421 NVKEQPSGSFNAGIGYGDRTKLSLQAGIQQDNFLGTGKRVGLNLSTVSYQRSAQITYNDP 480

Query: 477 YWNLDGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKI 536
           Y+ +DG+SLGG + Y++F+ S+  ++ Y ++ +      G+P +E NR  FG+ Y++ ++
Sbjct: 481 YFTIDGISLGGSLGYSEFDGSDFNVIQYNSKRWSIGANVGYPINEFNRINFGLTYSNVEL 540

Query: 537 GNLTPYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKM 596
            N   Y Q E F     +  D    +  D +  ++SW+R+ LN   FPTAG+ QRA + +
Sbjct: 541 YNRGYYEQTEQFYNQFTNGEDPDAAIKYDSYLASISWSRSTLNRGLFPTAGSSQRASFSI 600

Query: 597 TVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYA 656
           T P SD  YFK  +D + YFPL++   ++ L R RLGYGNGYG  +G + + PF ENF A
Sbjct: 601 TTPNSDVNYFKTVFDGKWYFPLSRNQRWSFLARVRLGYGNGYGDINGNEQILPFTENFTA 660

Query: 657 GGFTSLRGFGSNSAGPKAVYRDYSGSNNGSD-------------TATDDSVGGNAIALAS 703
           GG  SLRGF +N+ GP+ V+   +G+  G D             + +  S+GGNA+AL  
Sbjct: 661 GGSDSLRGFENNTVGPRGVFLGNTGTIVGPDGEVFPGDPADAQLSWSTRSLGGNAMALGG 720

Query: 704 VELIVPTPFASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQY---------YYDYS 754
           +ELIVPTPF  EE  N +RTS+F D+ +VWDTEFDY    DY  Q+           DYS
Sbjct: 721 IELIVPTPFVEEEMDNSVRTSLFVDVGNVWDTEFDY----DYYRQFDIASTQRGELLDYS 776

Query: 755 DPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           D + YRSS G+++QWVSPMGP+VFS +K I++ +GDD  FFTF IG+TF
Sbjct: 777 DWSLYRSSAGISVQWVSPMGPMVFSFSKAIQQRDGDDARFFTFNIGQTF 825