Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score = 75.5 bits (184), Expect = 9e-18
 Identities = 111/554 (20%), Positives = 201/554 (36%), Gaps = 65/554 (11%)

Query: 254 VYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSAVTRLEESVKKVLG 313
           V + + +  G  +T+  V+  G++ G+  +   LI    G      A+ R    +   L 
Sbjct: 149 VPMVITVTPGPKFTLGNVRLEGDVTGRNLDEYGLIA---GGDAGSLAIIRAGNKLIDDLK 205

Query: 314 ESGYAYPQV-RTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQM 372
             G    ++ +     +     V + +  E G    +  +   G  +   + +RR  R  
Sbjct: 206 AEGRPLAKLTKREAVANHATNTVDITMAAEGGPVAPLGAVTVTGEKTVDGDFIRRYSRLN 265

Query: 373 EGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNFGVGY 432
            G   + + +     RL +LG F ++ ++       +  + L   V E        G  Y
Sbjct: 266 GGEPYSPEKLRKAADRLRQLGVFSSLTIKEAGTLARDGTIPLTIEVSEGKHRYFGVGAQY 325

Query: 433 GTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGKVFYN 492
            T  G+  Q      N  G    + +   ++   +  ++E  D      G++      +N
Sbjct: 326 STTEGIGLQGYWGHRNLFGQAESLRIEGSVSRIAEASSVEGMD---YSAGITFTKPGMFN 382

Query: 493 QFEASEAGIVDYTN--ESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLA 550
                +  ++  T   ++Y      G           G  Y  N        L+V+    
Sbjct: 383 PRTTFKTSLIAKTENPDTYRAKTLTG---------TAGFAYELNDTDTAAAGLEVQ---- 429

Query: 551 AQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYF-KLQ 609
             A   D+ G        I L + R+  ++   PT G       K +    +  +F   +
Sbjct: 430 -WADTEDAFGKNEYLTTSIPLEFVRDTRDDKLNPTEGFRASLAAKPSYEALNGTFFSSFE 488

Query: 610 YDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGFGSNS 669
             +  Y  L    E  L++ G+L  G   G +D +D   P    F+AGG  S+RG+    
Sbjct: 489 GSITGYKGLGA--EDRLIMAGKLSGGVLVGGSDLQD--IPTTRRFFAGGGGSVRGYS--- 541

Query: 670 AGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQIRTSIFYDM 729
                 Y++ S  N     A  D+ GG +  + SVE       A  +  + I    F+D 
Sbjct: 542 ------YQEISPYN-----AAGDATGGRSYVVGSVE-------ARIKVTDTIGLVPFFDA 583

Query: 730 ASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEG 789
             V D                 D+SD    R+  G+ L++ +P GPL   +A P++KY+G
Sbjct: 584 GVVSDGVTP-------------DFSD---IRAGAGIGLRYATPFGPLRLDVAMPLEKYDG 627

Query: 790 DDEEFFTFTIGRTF 803
            +       IG++F
Sbjct: 628 GNNFGIYAGIGQSF 641