Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 774 a.a., group 1 outer membrane protein precursor from Agrobacterium fabrum C58

 Score =  269 bits (687), Expect = 5e-76
 Identities = 210/797 (26%), Positives = 354/797 (44%), Gaps = 53/797 (6%)

Query: 12  LATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGN 71
           L    SA  A   V+  I + G +R    +    + +  G +  + D+   +K LY++G 
Sbjct: 26  LGVLASAGVANAAVISKIDVRGAERSGADSVRSNITIAPGKNFSNSDIDESVKRLYATGY 85

Query: 72  FEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR-VGEALDRTTL 130
           F +V +   G+TL+V V E   +  V F+GN+ IK+++L   ++   +    +A+    +
Sbjct: 86  FSNVSMRVSGSTLVVTVNENQLVNQVVFNGNRKIKDDKLAGIVQTQPMGPFNQAIVTADI 145

Query: 131 SNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQINFIGNQVFSD 190
           + I++     Y ++G+ +  +      + + R ++ FV  EG   KI +I+FIGN  +SD
Sbjct: 146 ARIKEA----YSAIGRSDVEITTQTVSVGQGRVNIAFVINEGERTKIGRIDFIGNNSYSD 201

Query: 191 EELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQVDSTQVAISPD 250
             L +  N             D Y +  L  D EALR +Y +RGY  F+V S+   +   
Sbjct: 202 GRLAAVINTKKSNMLSFLTRKDVYNEDKLRADEEALRQFYYNRGYADFRVVSSDAVLDES 261

Query: 251 KKGVYITLNLNEGEPYTVSKVQFRGELMGKE-AEFTSLIPFEIGETYNGSAVTRLEESVK 309
           K    I++ ++EG+ Y    V     + G + +E   L+    G +Y+   V +  E++ 
Sbjct: 262 KNEYTISITVDEGKKYDFGNVAVESTVPGVDGSELQGLVETRQGASYSAKEVQQSMEAIS 321

Query: 310 KVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREM 369
           K +   GY + +V    + D     + +   V+ G+R YV  I   GN  TRD V+RRE 
Sbjct: 322 KRVAGEGYPFARVTPRGDRDMSGNTIGVTYIVDQGERAYVERIEIRGNTRTRDYVIRREF 381

Query: 370 RQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNFG 429
              EG   N   I   K RL  LG+F  V + T     + D+V +V  V++ ++G+   G
Sbjct: 382 DISEGDAFNQTIITAAKRRLEALGYFSKVNISTAG-GSAPDRVVIVVDVEDQSTGSFGIG 440

Query: 430 VGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMI-NDYQKNLTLEYRDPYWNLDGVSLGGK 488
            GY    GV  +  +++ NFLG G  + V A    D  +  +L + +PY+    ++ G  
Sbjct: 441 AGYSQNDGVLLEASVEEKNFLGRGQYIRVAAGAGEDDARTYSLSFTEPYFLGYRLAAGFD 500

Query: 489 VFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENF 548
           +F NQ ++ +     Y  +  G +L    P  E         YT+ +I          N 
Sbjct: 501 LFKNQSKSEDY----YNYDEQGFALRVTAPITE--NLSTTFKYTYKQINYEGKGDWQNNA 554

Query: 549 LAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYFKL 608
             A+       G   T    ++ +   N L++   P  G       +    G D++Y+K+
Sbjct: 555 NLAEPYQALIRGEDWTQSI-LSNTLNYNTLDDRNMPREGWQAALTNEFAGLGGDSEYYKI 613

Query: 609 QYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGFGSN 668
               R Y+ L+ +++    L G+ G+    G     DNL  F + F  GG   +RGF ++
Sbjct: 614 YAKARYYYTLSDEYDVIGSLTGQAGHVMPTG-----DNLLVF-DQFKFGG-RQVRGFKND 666

Query: 669 SAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQIRTSIFYD 728
             GP+       GS         DS+GG     AS E+  P P   E+    +R + F D
Sbjct: 667 GIGPRI------GS---------DSIGGTTYFAASAEVTAPMPGVPEDF--GLRLAGFVD 709

Query: 729 MASVWDTEFDYRGKADYGNQYYYDYS--DPTNYRSSYGVALQWVSPMGPLVFSLAKPIKK 786
             ++            YGN+     +  D  + R+S G+ + W SP GP+    A PI K
Sbjct: 710 AGTM------------YGNKVSTSQTVKDDNSIRASAGIGVMWASPFGPIRVDYAIPIAK 757

Query: 787 YEGDDEEFFTFTIGRTF 803
            + D+E+ F F +  TF
Sbjct: 758 EDYDEEQRFRFGMSNTF 774