Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1322 a.a., DNA polymerase III subunit alpha from Rhodanobacter sp. FW510-T8

 Score = 1066 bits (2756), Expect = 0.0
 Identities = 587/1182 (49%), Positives = 784/1182 (66%), Gaps = 55/1182 (4%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++ HL +HS++S+VD   ++  LV      G+PA+ALTD +N+  LVKFY      G+KP
Sbjct: 147  RYTHLHLHSEYSLVDSTIRIKALVAACVRDGIPAVALTDDSNMFALVKFYKACSAAGIKP 206

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
            I G D  + + +      +LTLL ++  GY NL+ L+S+A+  G    + +++  WL   
Sbjct: 207  IGGCDLWISAPD-DPRPWRLTLLCQDRGGYLNLSRLVSRAWQEGQHGGRALVEAGWLTAG 265

Query: 125  A-EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLH 183
            A +GLI L G +S EVGR  L    +     +      F +  YLEL R GR  EE++  
Sbjct: 266  ASDGLIALLGRES-EVGRIALNQGIEAALAKLRRLARLFPERLYLELTRCGRDGEENWNT 324

Query: 184  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243
             AL +A +  LPVVA+N+V F+T++ F AHE RV I+ G  L DP+RP+ YS +QYL++ 
Sbjct: 325  AALALATELGLPVVASNDVRFLTQDDFGAHEARVCINQGRVLADPKRPREYSDQQYLKTP 384

Query: 244  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSREGLEE 302
             EM  LFAD+PEAL N+VE+AKRC++ ++ G Y+LP+FP   G  ++  +   SR+GL E
Sbjct: 385  EEMAALFADLPEALENTVELAKRCSLELKFGTYYLPDFPVPEGHDLDSHIRELSRQGLRE 444

Query: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
            RL      P        +Y+ RL+ ELDVI +MGFPGYFLIV +FI W K N IPVGPGR
Sbjct: 445  RLAGA---PLAAGHTLADYEARLERELDVIVKMGFPGYFLIVADFINWGKQNGIPVGPGR 501

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GSGAGSLVA+ALKITDLDPL+++LLFERFLNPERVSMPDFD+DFCMD+RD+VID+V+  Y
Sbjct: 502  GSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVSRKY 561

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP-GMTLEKAF------ 475
            GRD VSQIIT+G+MAAKAV+RD GRVL   +G VD+++K+VPP P  +TL  A       
Sbjct: 562  GRDRVSQIITYGSMAAKAVLRDSGRVLSMGYGQVDKLAKMVPPRPLDLTLSDALGRSEKS 621

Query: 476  IAEP-----ALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYC 530
              EP        E Y+ DE+   LID    LE  TRNAGKHAGGVVI+P+ +TDFAP+YC
Sbjct: 622  KKEPDRVVKEFCEAYEQDEDAHALIDLALKLENLTRNAGKHAGGVVIAPSPLTDFAPLYC 681

Query: 531  DAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIP 590
            +A G   VTQ+DK+DVE  GLVKFDFLGLRTLTIIDWA+  +N R  KAG+ P+ I A+P
Sbjct: 682  EAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKAGETPLDIAALP 741

Query: 591  LDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDN 650
            LDDA ++  L+ A+T AVFQLES GM+ ++K  +PD FEDIIALVAL+RPGP+   ++ +
Sbjct: 742  LDDAPTYELLKKAQTVAVFQLESSGMQRMLKDARPDRFEDIIALVALYRPGPMD--LIPS 799

Query: 651  FIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710
            F+ RKHGRE + YPD +     ++ IL+ TYGI++YQEQVMQ+AQ++ GY+LGGAD+LRR
Sbjct: 800  FVARKHGREEVEYPDPR-----VEPILQETYGIMVYQEQVMQMAQIVGGYSLGGADLLRR 854

Query: 711  AMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770
            AMGKKK EEMAK+RA F+EGA K+G+ GE A  IFDL+EKFAGYGFNKSH+AAYALVSYQ
Sbjct: 855  AMGKKKLEEMAKERAKFREGAAKDGLTGEKADAIFDLMEKFAGYGFNKSHAAAYALVSYQ 914

Query: 771  TLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGA 830
            T WLKTHYPAEFMAA +++DMDNT+KVV  +DE + +G+ V PPD+N+  Y F   +   
Sbjct: 915  TAWLKTHYPAEFMAATISSDMDNTDKVVTFLDESRAIGIAVQPPDVNASEYMFVAIEPRT 974

Query: 831  IVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890
            I YG+GAIKGVG+G  E+I+  R  G Y  DL DFC R+D  ++N+RV+E LIL+GALD 
Sbjct: 975  IQYGLGAIKGVGQGACESIVAERANGKY-TDLADFCRRVDPTRLNRRVLEALILSGALDT 1033

Query: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQ-KYTQVPEWPEKVR 949
            L  +RA++M  + DA++AA Q+ +    GQ DMFG    A   V +     VPEWP + +
Sbjct: 1034 LAANRASLMLQLPDAIKAAEQYLRDRQSGQNDMFGTAMGAMTPVLRIDLPTVPEWPLEQK 1093

Query: 950  LEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAA-------PTRRDQS---------- 992
            L+GER+TLG YL+GHP D ++ EL + ++C L E A       P + D+           
Sbjct: 1094 LQGERDTLGHYLSGHPTDPWMDELAQLSTCPLGEIADRYQPPKPRKNDEGDNNRFRRGPD 1153

Query: 993  --LTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVS 1050
               TVAG+V A R    KRG     + L+D +G +EV  + E   + A  L +D++LVV 
Sbjct: 1154 TPWTVAGMVTAVR----KRGDSDAFVRLEDGTGVIEVSFFGELYQQIAPLLTRDEMLVVD 1209

Query: 1051 GQVSFDDFN-GGLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRA 1109
            G +  DDF+ GG ++ AR    L  A  + AR L + +  + I   F  +  H L  +R 
Sbjct: 1210 GGLRIDDFSGGGFQLRARSACSLADACRRHARLLQLKL--NGIGPDFVGQLQHALAGYRG 1267

Query: 1110 GTVPVNVY-YQRPDARARLTLGTEWRVTPSDTLLDELKQLLG 1150
            G   V ++ Y+   A+A L LG  WRV     LL  ++ L G
Sbjct: 1268 GRTSVTLHGYRNQGAQADLELGEAWRVEAIPDLLRAVRALPG 1309