Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., error-prone DNA polymerase from Rhodanobacter sp000427505 FW510-R12

 Score =  390 bits (1002), Expect = e-112
 Identities = 310/1059 (29%), Positives = 510/1059 (48%), Gaps = 71/1059 (6%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            +  L   S+ S + G++    L ++ AA+G  A+A+TD  +L G+V+    +   GV  I
Sbjct: 2    YAELHCLSNLSFLRGVASARALFERAAALGYAALAITDECSLAGIVRGLEASRATGVPLI 61

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
            +G +  L+         +L LLA++  GY  L+ LI+ A  R          K    +H 
Sbjct: 62   VGTELVLEDG------ARLVLLAEDRAGYATLSRLITVARARAAKGAYQARWKDLEGDHQ 115

Query: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185
              L +L          A  +G  +++   +   Q  +     +EL R G  D E+ +  A
Sbjct: 116  GLLAILCTIDRHGTVPADAEGRAKRLATVLP--QRAWIG---VELHR-GDRDAEAIIACA 169

Query: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245
              V     LP+VA  +V   T       +   AI  G  +         + +++LR+ AE
Sbjct: 170  A-VGAAAGLPLVAAGDVHMATRGQRALQDTVTAIRLGMPVAAAAGELFPNGERHLRTPAE 228

Query: 246  MCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGLEERLE 305
            + EL+A  PE LA ++ IA  C++ +    Y     P   + +        R  +EE   
Sbjct: 229  LQELYA--PELLAETLRIAAHCHLDLGTLGY---RHPVDVVPLAQAPATWLRHLVEEGAA 283

Query: 306  FLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSG 365
              +P     A   P    +++ EL +I ++G+  +FL V + +++++   I +  GRGS 
Sbjct: 284  TRWP-----AGTPPALGAQIERELALITELGYEAFFLTVHDIVRYARSRGI-LCQGRGSA 337

Query: 366  AGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRD 425
            A S+V YAL IT++DP    LLFERFL+ ER   PD DVDF  ++R++VI ++   YGRD
Sbjct: 338  ANSVVCYALGITEVDPERGHLLFERFLSRERAEPPDIDVDFEHERREEVIQYIYGRYGRD 397

Query: 426  AVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQELY 485
              +      T   ++ +RDVGR L      VDR+++L+    GM    A +AE  +    
Sbjct: 398  RAALAAAITTYRPRSAVRDVGRALDLDPVLVDRVAQLLGHWGGMEDVTARLAESGI---- 453

Query: 486  DAD-EEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKN 544
            D D   ++  +     L G  R+  +H GG VIS   +T+  P+         V Q+DK+
Sbjct: 454  DTDTPSMQRWLTLAAQLVGTPRHLSQHVGGFVISAAPLTELVPVEPATMPGRTVIQWDKS 513

Query: 545  DVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAK 604
            D+ET GL+K D L L  L+++  A       +++     + I  IP +D  ++  L+ A 
Sbjct: 514  DLETMGLLKVDILALGMLSVLRRAF----EHVERHHGTTLSIATIPAEDPATYAMLRRAD 569

Query: 605  TTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYP 664
            T  VFQ+ESR    ++ RL+P CF D++   A+ RPGP+Q GMV  ++ R+ GRE  SYP
Sbjct: 570  TVGVFQVESRAQMAMLPRLRPTCFYDLVVQTAIIRPGPIQGGMVHPYLRRRQGREVASYP 629

Query: 665  DEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQ 723
             ++     ++ +LE T G+ ++QEQVMQ+A V +G+T G AD LRR+MG  ++   +   
Sbjct: 630  SDE-----VRGVLERTLGVPIFQEQVMQLAVVAAGFTAGEADQLRRSMGAWERHGTLEHF 684

Query: 724  RAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFM 783
            RA    G    G     A ++F+++  F  YGF +SH+A++AL++Y + +LK HYP+ F+
Sbjct: 685  RARLLSGMTGRGYAPAFADQVFEMIRGFGAYGFPESHAASFALLAYASAYLKAHYPSAFL 744

Query: 784  AAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGA---IVYGIGAIKG 840
            AA++ +          L  + +  G+ + PPD+    +  +++  GA   I  G+  I G
Sbjct: 745  AALLNSQPMGFYTTDQLAQDARRHGIEIRPPDVRVSGWESHLEGEGARAPIRLGLREISG 804

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHR--AAM 898
            +       +L+AR +   FKDL D   R  L   ++R +  L  AGAL  L  HR  A  
Sbjct: 805  LRAESAARLLQARREAP-FKDLSDVARRAAL---DQRDLPLLADAGALQSLAGHRHVARW 860

Query: 899  MASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLG 958
            +AS  +A            FG      V   AP   E+             +  +  ++G
Sbjct: 861  VASGVEAT--------LPLFGGTAEATVALRAPTAGEE-------------MAADYASMG 899

Query: 959  LYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTL 1018
            L    HP+      L   +   L EAA     + + VAGL+   +      G  +  +TL
Sbjct: 900  LSTGSHPMALLRSSLLGSSYATLAEAARAGHRKRIRVAGLIGMRQSPPAAGG--VTFLTL 957

Query: 1019 DDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDD 1057
            +D +G + V+++ +  ++  + L     +VV G++   D
Sbjct: 958  EDETGWLNVVVWRDVAEQCRQALRSAGPVVVDGRIEHAD 996