Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., error-prone DNA polymerase from Rhodanobacter sp000427505 FW510-R12

 Score =  325 bits (834), Expect = 9e-93
 Identities = 293/1065 (27%), Positives = 483/1065 (45%), Gaps = 85/1065 (7%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MSD  +  L   SDFS   G S    L ++  A G  A+A+TD  +L G+V+ Y  ++  
Sbjct: 1    MSD--YAELHCLSDFSFGRGASNAAELFERARACGYSALAITDECSLAGIVRAYQASNET 58

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+K I+GA+F L+         KL LL +N  GY  L  LI++         +      +
Sbjct: 59   GLKLIVGAEFQLEDGP------KLVLLCENRQGYAELCRLITRG-------RRASGKGTY 105

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
             +  A+    L  G  G +  AL     Q       + +  F D  +L +      D+  
Sbjct: 106  RLTCAD----LESGMPGTL--ALWMPGLQADTAHGRWIRATFGDRAWLAVELHRGPDDVG 159

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
             L     +    DLP+ A+ +V               AI     + +       + +++L
Sbjct: 160  RLCELQALGHALDLPLAASGDVHMHVRRRLALQHTLTAIRHRVPIAEAGALIFRNGERHL 219

Query: 241  RSEAEMCELFADIPEALAN-SVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREG 299
            R    +  ++   P AL   SV IA+RC  T  +GE    ++PT  +          R+ 
Sbjct: 220  RRRDVLAGIY---PAALMQESVRIAERC--TFHMGELKY-DYPTELVPDGHTPASWLRQL 273

Query: 300  LEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 359
             EE + + +P     AK R   D+    EL +I    +  +FL V + +++++   I + 
Sbjct: 274  AEEGIRWRWPQG-ASAKVRKLIDD----ELALIASKQYEAFFLTVHDIVRFARGEGI-LC 327

Query: 360  PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 419
             GRGS A S V +AL +T++DP    LL  RF++ +R   PD DVDF  ++R++VI ++ 
Sbjct: 328  QGRGSAANSAVCFALGVTEVDPEVNHLLVARFISEDRDEPPDIDVDFEHERREEVIQYIY 387

Query: 420  EMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEP 479
              YGR+  +   T      ++ +RDV + LG P   +DR+S +     G +     + E 
Sbjct: 388  GKYGRERAALAATVICYRGRSAVRDVAKALGLPLDQIDRLSDVFARGWGDSKADERLREQ 447

Query: 480  ALQELYDADEE-VKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538
                 +D D   ++ ++     L G  R+  +H GG VIS T++++  P+   A  +  V
Sbjct: 448  G----FDPDSPIIRRVLKLTYELLGMPRHLSQHVGGFVISDTSLSEMVPVENAAMPDRTV 503

Query: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598
             Q++K+D++   ++K D L L  LT +    GL    L+        I  I   D  ++ 
Sbjct: 504  IQWEKDDLDYMRMLKVDCLALGMLTCLRKCFGL----LESGHGVAKTIATIEPGDRATYE 559

Query: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
             +Q A T  VFQ+ESR    ++ R +P  F D++  VA+ RPGP+Q  MV  ++ R++  
Sbjct: 560  MIQRADTVGVFQIESRAQMAMLPRHRPANFYDLVIQVAIVRPGPIQGDMVHPYLRRRNKE 619

Query: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKP 717
            E + YP  ++     K++LE T G+ L+QEQVM++A V + +T   AD LRR+M   K+ 
Sbjct: 620  EVVDYPSPQF-----KDVLERTLGVPLFQEQVMKLAIVAADFTDSEADKLRRSMAAWKRH 674

Query: 718  EEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 777
              +   R    +G  KNG     A +IF+ ++ F  YGF +SH+A++A + Y + WLK H
Sbjct: 675  GGLEPHRDKLMQGMLKNGYTAAFAARIFEQIKGFGSYGFPESHAASFANLVYASCWLKCH 734

Query: 778  YPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVD-------DNGA 830
            YPA F  A++ A          +V + +   + V P D+    +   ++       D  A
Sbjct: 735  YPAAFACALLNAQPMGFYGPSQIVQDVRRHRVAVRPVDVRFSDWDCTLEPDPRGHADARA 794

Query: 831  IVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890
            I  G+  ++G  E     ++ AR +   F D+ D C+R  L   ++R  E L  A AL  
Sbjct: 795  IRLGLRMVRGCSEAAALRLMAARGRQP-FADVTDLCSRAGL---DRRHQELLADAAALRG 850

Query: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950
            L  HR     +V      A    Q   FG            E   ++   +P   +    
Sbjct: 851  LAGHRHRARWAV------AGVEPQLPLFGS-----------ESPGERAVALPLPTQAEDT 893

Query: 951  EGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRD---QSLTVAGLVIAARVMTT 1007
              +   +GL L  HP+ +    L    +    +    RR      + VAGLV + +   T
Sbjct: 894  LADYARVGLSLGAHPLRQIRARL---NAAHCMDGKTLRRQPHHSRVRVAGLVTSRQQPQT 950

Query: 1008 KRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQ 1052
              G  I  +TL+D  G + V++  +  +     L + ++L V GQ
Sbjct: 951  ASG--IIFVTLEDEHGLINVIVRRQVAEAQRRALLQARLLAVEGQ 993