Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1231 a.a., DNA polymerase III subunit alpha from Rhodanobacter sp000427505 FW510-R12

 Score = 1041 bits (2693), Expect = 0.0
 Identities = 585/1233 (47%), Positives = 780/1233 (63%), Gaps = 105/1233 (8%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++ HL +HS++S+VD   ++  LV      G+PA+ALTD +N+  LVKFY      G+KP
Sbjct: 4    RYTHLHLHSEYSLVDSTIRIKALVTACVRDGIPAVALTDDSNMFALVKFYKACTAAGIKP 63

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
            I G D  +   +      +LTLL ++  GY NL+ L+S+A+  G    + +++  WL   
Sbjct: 64   IGGCDLWISPAD-DPRPWRLTLLCQHREGYLNLSRLVSRAWQEGQHGGRALVEAGWLSAG 122

Query: 125  AEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF 184
            A   ++   G+  EVGR  L    +     +      F +  YLEL R GR  EE++   
Sbjct: 123  ASSGLIALLGRESEVGRIALNQGAEAALARLRPLARLFPERLYLELTRCGREGEENWNTA 182

Query: 185  ALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEA 244
            AL +A +  LPV+A+N+V F+T++ F AHE RV I  G  L DP+RP+ YS +QYL++  
Sbjct: 183  ALALAAELGLPVLASNDVRFLTQDDFGAHEARVCIQQGRVLADPKRPREYSDQQYLKTPD 242

Query: 245  EMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSREGLEER 303
            EM  LFADIPEAL N+VE+AKRC + ++ G+Y+LP+FP   G  ++  +   +R+GL+ER
Sbjct: 243  EMAALFADIPEALENTVELAKRCTLELKFGKYYLPDFPVPEGHDLDSHIRELARQGLKER 302

Query: 304  LEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRG 363
            L      P        +Y  RL+ ELDVI +MGFPGYFLIV +FI W K N IPVGPGRG
Sbjct: 303  LANA---PLAADHTLADYQARLERELDVIVKMGFPGYFLIVADFINWGKQNGIPVGPGRG 359

Query: 364  SGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYG 423
            SGAGSLVA+ALKITDLDPL+++LLFERFLNPERVSMPDFD+DFCMD+RD+VID+VA  YG
Sbjct: 360  SGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARKYG 419

Query: 424  RDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP-GMTLEKAF-IAEPAL 481
            RD VSQIIT+G+MAAKAV+RD GRVLG  +  VDRI+KL+P  P  +TL  A   +E A 
Sbjct: 420  RDRVSQIITYGSMAAKAVLRDSGRVLGFGYNQVDRIAKLIPARPLDLTLSCALGRSEKAK 479

Query: 482  Q----------ELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCD 531
            +          ELY+ DEE + LID    LE  TRNAGKHAGGVVI+P+ +TDFAP+YC+
Sbjct: 480  KEPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGGVVIAPSPLTDFAPLYCE 539

Query: 532  AEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKK------------- 578
            A G   VTQ+DK+DVE  GLVKFDFLGLRTLTIIDWA+  +N R  K             
Sbjct: 540  AGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKERPHLPSGHLEPR 599

Query: 579  ---------------------------------------AGKPPVRIEAIPLDDARSFRN 599
                                                    G+ P+ I  +PLDDA ++  
Sbjct: 600  PSMASALRAAEAARDGNPAVSSLQAGEDNAEQPAAAASSMGEGPLDISQLPLDDAPTYEL 659

Query: 600  LQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 659
            L+ A+T AVFQLES GM+ ++K  +PD FEDIIALVAL+RPGP+   ++ +FI RKHGRE
Sbjct: 660  LKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGPMD--LIPSFIARKHGRE 717

Query: 660  AISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719
             + YPD +     ++ IL+ TYGI++YQEQVMQ+AQ++ GY+LGGAD+LRRAMGKKK EE
Sbjct: 718  EVDYPDPR-----VEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKVEE 772

Query: 720  MAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 779
            MAK+RA F+EGA K+G+ GE A  IFDL+EKFAGYGFNKSH+AAYALVSYQT WLKTHYP
Sbjct: 773  MAKERAKFREGAAKDGLSGEKADAIFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKTHYP 832

Query: 780  AEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIK 839
            AEFMAA +++DMDNT+KVV  +DE + +G+ V PPD+N+  Y F   +   I YG+GAIK
Sbjct: 833  AEFMAATISSDMDNTDKVVTFLDESRAIGIAVQPPDVNASEYMFVAIEPRTIQYGLGAIK 892

Query: 840  GVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMM 899
            GVG+G  EAI+  R  G Y  DL DFC R+D  K+N+RV+E L+L+GALD L  +RA++M
Sbjct: 893  GVGQGACEAIVAERAHGRY-TDLADFCRRVDPTKLNRRVLEALVLSGALDALAANRASLM 951

Query: 900  ASVDDAVRAASQHHQAEAFGQADMFG-VLTDAPEEVEQKYTQVPEWPEKVRLEGERETLG 958
              + DA++AA QH +    GQ DMFG  + +A   ++ +   VPEWP + +L+GER+TLG
Sbjct: 952  LQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNATPVLKIELPTVPEWPLEQKLQGERDTLG 1011

Query: 959  LYLTGHPVDEYLKELTKYTSCRLNEAA-------PTRRDQS------------LTVAGLV 999
             YL+GHP D +  EL + ++C L E A       P + D               TVAG+V
Sbjct: 1012 HYLSGHPTDPWKDELAQLSTCPLGEIADRYQPPKPRKNDHDDNNRFRRGPDTPWTVAGMV 1071

Query: 1000 IAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFN 1059
             A R    KRG     + L+D SG +EV  + E   + A  L +D++LVV G +  D+F+
Sbjct: 1072 TAVR----KRGDSDAFVRLEDGSGLIEVSFFGELYQQIAPLLTRDEMLVVDGGLRIDEFS 1127

Query: 1060 -GGLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVY- 1117
             GG ++ AR    L  A  + AR L + +  + I   F E+  H L  +R G   V ++ 
Sbjct: 1128 GGGFQLRARSACSLADACRRHARLLQLKL--NGIGPGFVEQLQHALAGYRGGRTSVTLHG 1185

Query: 1118 YQRPDARARLTLGTEWRVTPSDTLLDELKQLLG 1150
            Y+   A+A   LG  WRV     LL  ++ L G
Sbjct: 1186 YRNRHAQADFELGEAWRVDAIPDLLRAVRALPG 1218