Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., DNA polymerase III subunit alpha from Xanthobacter sp. DMC5

 Score =  806 bits (2081), Expect = 0.0
 Identities = 481/1159 (41%), Positives = 683/1159 (58%), Gaps = 47/1159 (4%)

Query: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61
            +DP FIHL +HS +S+++G   V  L     A   PA+ALTD  NL G ++F       G
Sbjct: 3    TDPGFIHLHVHSSYSLLEGALSVGKLADLAKADYQPAIALTDTGNLFGALEFSEKMSGSG 62

Query: 62   VKPIIGADFTLQSEE-------FGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQP 114
            ++PI G    L   E             ++ LLAK++ G++NL  L+S+++L    + +P
Sbjct: 63   IQPIPGVSLALDLPEPAGPRGGLRPRKPRVVLLAKDDAGWRNLMRLVSRSFLETASEDEP 122

Query: 115  VIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTG 174
             I   WL E  +GLI L+GG SG + RA++ G+ +     ++   + F D  Y+E+ R G
Sbjct: 123  RILPEWLAEANDGLICLTGGPSGPLDRAIVGGHPEMAADRLDLLTSLFGDRLYVEVQRHG 182

Query: 175  RADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNY 234
               E       LD+A    +P+VA NE  F  +  +EAH+  +AI +G  L +  R +  
Sbjct: 183  ADPERLAEPALLDLAYTKGVPLVAANEPFFAAKSDYEAHDGLLAIAEGRLLSEGDR-RRL 241

Query: 235  SPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDF--- 291
            + +   ++ AEM ELFAD+PEA AN+VEIAKRC   VR  +  LP F T     E     
Sbjct: 242  TAEHRFKTRAEMLELFADLPEATANTVEIAKRCAYRVRTVKPILPRFTTADEKAEGSDPL 301

Query: 292  ------LVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345
                  L  ++ EGL  RL    P P +       Y +RL  E+ VI +M FPGYFLIV 
Sbjct: 302  EAEAAELKRQAEEGLAARLAKHGPAPGLD---EAAYHDRLAYEVSVITKMKFPGYFLIVS 358

Query: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405
            +FI+W+K +DIPVGPGRGSGAGSLVAY+L+ITDLDPL + LLFERFLNP+RVSMPDFDVD
Sbjct: 359  DFIKWAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVD 418

Query: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465
            FC ++RD+VI +V E YGR  V+QIITFGT+ A+ V+RDVGRVL  P+G VD++ KLVP 
Sbjct: 419  FCQERRDEVIRYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQ 478

Query: 466  DPG--MTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAIT 523
            +P   +TL++A   EP LQ   D +E VK   D    LEG  R+A  HA G+VI    + 
Sbjct: 479  NPANPVTLKQAIEDEPRLQAARDQEEVVKRAFDIAVKLEGLNRHASTHAAGIVIGDRQLH 538

Query: 524  DFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPP 583
            +  P+Y D + + PVTQ++   VE AGLVKFDFLGL+TLT I+ A+ LV+ R        
Sbjct: 539  ELVPLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIEKAVKLVHQR-----GIE 593

Query: 584  VRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPL 643
            + I  IPLDDA+++  L   +T  VFQ+ES GM+  +  ++ D  EDI+ALVAL+RPGP+
Sbjct: 594  LDISKIPLDDAKTYHMLGKGETVGVFQVESAGMRRALVDMKADRIEDIVALVALYRPGPM 653

Query: 644  QSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLG 703
             +  +  + D KHGR   + PD  + H  L+  L+ T+G+I+YQEQVMQIAQ ++GY+LG
Sbjct: 654  AN--IPVYCDCKHGR---ATPD--YLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLG 706

Query: 704  GADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763
             AD+LRRAMGKK   EM KQR  F  GA   G++   A  IFDL+ KFA YGFNKSH+AA
Sbjct: 707  EADLLRRAMGKKIRAEMEKQRERFVSGAAGRGIEKAQADTIFDLLAKFADYGFNKSHAAA 766

Query: 764  YALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRF 823
            YALV+YQT WLK +YP EF+AA MT D  NT+K+     E + +G+ V+PP+IN     F
Sbjct: 767  YALVAYQTAWLKANYPTEFLAASMTLDKGNTDKLAEFRQEAQRLGIEVVPPNINLSAREF 826

Query: 824  NVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLI 883
             V D G I+Y + AIKGVGE  +EA++ AR     F+   DF  R+ +K VNKR +E L+
Sbjct: 827  GVKD-GKIIYAMAAIKGVGEAAVEALVAARGDRP-FRSFADFATRLPVKLVNKRTLESLM 884

Query: 884  LAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPE 943
             AG  D L  +RA   A+++  V  A +       GQ DMFG  +           +   
Sbjct: 885  AAGCFDVLEKNRARAFAAIEPIVAEAQRVEANAQSGQNDMFG--SGPAAAASLPIPEASP 942

Query: 944  WPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLT--VAGLVIA 1001
            W    RL+ E +++G +LTGHP+D+Y + L K       + +   R  +    +A  V++
Sbjct: 943  WLPSERLQKEYDSIGFFLTGHPLDDYAEALKKMRVQSFADFSRAVRSGAAAGRLAATVVS 1002

Query: 1002 ARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDK--ILVVSGQVSFDDFN 1059
             +   TK GTR+G++ L D SG  E +++SE L  Y + LE     +++V+ +++ +D  
Sbjct: 1003 KQERRTKSGTRMGIVGLSDPSGHYEAVIFSEGLAHYRDLLEPGTPLLMMVAAEMNGEDVR 1062

Query: 1060 GGLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHR-AGTVPVNVYY 1118
              +++++ E +D  +A  K  +GL I +   +  +    R S      + AG V + +  
Sbjct: 1063 --VRINSCEKLDPVTA--KHQKGLRIFLRSPEPIEGIARRLSDGKSGEKGAGEVSLILLV 1118

Query: 1119 QRPDARARLTLGTEWRVTP 1137
                A   ++L  ++ V+P
Sbjct: 1119 DDAHAEVEVSLPGKYSVSP 1137