Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

 Score =  343 bits (880), Expect = 4e-98
 Identities = 296/1062 (27%), Positives = 492/1062 (46%), Gaps = 89/1062 (8%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            +  L   S+FS   G S    L ++    G  A+A+TD   L G+V+ +  A    +  I
Sbjct: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
            IG++  +      D   KL LL ++  GY++L  LI+ A  R       ++ + +  +  
Sbjct: 63   IGSEVRI------DNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDF-DQPL 115

Query: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185
             GL+ L   +  +      + + Q + R        F +  +L +      ++  +L   
Sbjct: 116  PGLLALWVAEDSDT-----QADSQWLRRT-------FGERLWLAVHLHCGQNDARHLEQR 163

Query: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245
            L +A    LP VA  +V           +   AI     + +     + + +++LRS   
Sbjct: 164  LQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223

Query: 246  MCELFADIPEALANSVE-IAKRCNVTVRLGEYFLPN--FPTGGMAIEDFLVMKSREGLEE 302
            +  L+   P+ L +  E IA+RC   +    Y  P+   P G  A + +L   + EG+ +
Sbjct: 224  LAALY---PQPLLDETETIARRCTFDLSQLRYHYPHELVPAGHNA-QSWLRAVTEEGIAK 279

Query: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
            R    +P   V AK      +++  EL++I+++G+  YFL V + +Q+++   I +  GR
Sbjct: 280  R----WPQG-VDAKTA----QQINSELELISELGYESYFLTVHDIVQFARSRSI-LCQGR 329

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GS A S V YAL IT++DP    +LFERFL+ ER   PD DVDF  ++R++V+ +V + Y
Sbjct: 330  GSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRY 389

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482
            GR   +      +  A   +RDV + LG P    D+I+ L          +   A P L 
Sbjct: 390  GRTRAALTAVVSSYHASGAVRDVAKALGLP---PDQINALAD-----CCGRWSDAAPPLD 441

Query: 483  EL----YDADEEV-KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFP 537
             L    +D D  + + ++   + L G  R+  +H GG VIS   +    P+   A     
Sbjct: 442  RLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERT 501

Query: 538  VTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSF 597
            + Q+DK+D++  GL+K D L L  L+ I     L    L++     + +  IP +D  ++
Sbjct: 502  IIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDL----LRRHRNRDLALATIPKEDPATY 557

Query: 598  RNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHG 657
              +  A T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R++ 
Sbjct: 558  AMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNK 617

Query: 658  REAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KK 716
             E  +YP  +     LK +LE T GI L+QEQVMQIA V + Y  G AD LRR+M   K+
Sbjct: 618  EEETTYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKR 672

Query: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776
               +   +   + G  KNG     A +IF+ ++ F  YGF +SH+A++AL++Y + WLK 
Sbjct: 673  HGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 732

Query: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDD----NGAIV 832
            H PA F  A++ +          ++ + +   L + P D+ +  +  +++       AI 
Sbjct: 733  HEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIR 792

Query: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892
             G+  I G  E     I  AR++   F D+ D   R  L   + R    L  AGAL  L 
Sbjct: 793  MGLRMISGFREEDARRIEAARHRRA-FSDIADLDDRAGL---DARAQALLADAGALRAL- 847

Query: 893  PHRAAMMASVDDAVRAASQHHQA--EAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950
                            A   H+A  E  G     G+    P   ++   ++P       L
Sbjct: 848  ----------------AGNRHKARWEVAGVHKQLGLFAGLPSP-DEAVVELPSPTVGEDL 890

Query: 951  EGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010
              +  T+G  L  HP+     EL K       E       ++++VAGLV   +   T  G
Sbjct: 891  HADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQRPGTASG 950

Query: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQ 1052
              +  +TL+D  G + V+++ +  +R  + L   +++ V G+
Sbjct: 951  --VTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGR 990