Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

 Score = 1308 bits (3386), Expect = 0.0
 Identities = 667/1172 (56%), Positives = 851/1172 (72%), Gaps = 23/1172 (1%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HLR+H+++S+VDGL ++ PLVK +  M MPA+A+TD  N+C LVKFY  A   G+KPI
Sbjct: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
             GAD  L +++  + L++++LLA N VGY+NLT LIS+ ++ G      +I++ W+ E +
Sbjct: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124

Query: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185
            EGLI+LS  K GE+G ALL GN Q+ E   + +   F D FYLE+ RT R ++E +LH A
Sbjct: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184

Query: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245
            + +A++   P+VATN+V FI +E FEAHE RV I +G  L+DPRR KNYS +QYL+S  E
Sbjct: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244

Query: 246  MCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERL 304
            M ELF+D+PEAL NSVEIAKRCN+ V+LG++FLPNFP   GM I+++    S +GLEERL
Sbjct: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304

Query: 305  EFLFPDP--EVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
              L P    E    +R  Y +RL  ELD+I QMGFPGYFLIVM+FIQW+K+N +PVGPGR
Sbjct: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GSGAGSLVAY  KITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMD RD+VI++VAE Y
Sbjct: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482
            GR+AVSQIITFG+MAAKAVIRDV RV G  +G  DR+SK++P + GMTLEKA+  E  L+
Sbjct: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484

Query: 483  ELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFD 542
            +    DEE  E+ D  R LEG  RN GKHAGGVVI+PT +TDF+PIYCD EG   VTQFD
Sbjct: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544

Query: 543  KNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQD 602
            K+DVE AGLVKFDFLGLRTLTIIDWAL  +N    K  + P+ I  IPLDD  ++  LQ 
Sbjct: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604

Query: 603  AKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAIS 662
            A+TTAVFQLESRGMKELIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR  ++
Sbjct: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664

Query: 663  YPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722
            YP   +Q+E LK +L PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724

Query: 723  QRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEF 782
            QR  F EG   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK HYPA F
Sbjct: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784

Query: 783  MAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVG 842
            MAAV++ADM NT+KVV L++E + M L +  PD+N+  ++F V+D G I+YG+GAIKGVG
Sbjct: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844

Query: 843  EGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPH-------- 894
            EGP+EAI EAR + G FKDLFDFCAR+DLK++NKR ++ LI +GALDRLGP+        
Sbjct: 845  EGPVEAITEAR-QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAY 903

Query: 895  -------RAAMMASVDDAVRAASQHHQAEAFGQADMF-GVLTDAPEEVEQKYTQVPEWPE 946
                   RA ++ ++++A++AA Q  +    G AD+F G+  +   +V   + +  E   
Sbjct: 904  QANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTL 963

Query: 947  KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMT 1006
            K RL+GE++TLGLYLTGHP+DEY  E+ ++   R+ +  P R  Q  TVAG++IA RVM 
Sbjct: 964  KERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGMIIALRVMK 1021

Query: 1007 TKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSA 1066
             K+G ++G +TLDDRSGR+E  L+++A       L+ D ++VV G+VS DDF+GGL++  
Sbjct: 1022 NKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRI 1081

Query: 1067 REVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARAR 1126
            + VM +  AR   A  L + +    +          +L+ HR G  PV + Y   DA+A 
Sbjct: 1082 KRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHR-GACPVTMEYTGSDAKAM 1140

Query: 1127 LTLGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158
            L  G  WR+ P+D L+  L+   G D V L++
Sbjct: 1141 LQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172