Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1117 a.a., Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  335 bits (860), Expect = 9e-96
 Identities = 300/1111 (27%), Positives = 500/1111 (45%), Gaps = 109/1111 (9%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC--G 61
            P +  L   ++FS   G S    +V++   +G  A+A+TD  ++ G+V+    AH C  G
Sbjct: 33   PDYAELHCLTNFSFQRGASTPEEMVERAYQLGYKALAITDECSVAGIVR----AHVCLRG 88

Query: 62   VK-------------PIIGADFTLQ---SEEFGDELTKLTLLAKNNVGYKNLTLLISKA- 104
            ++             P I  + T +     EF  E  +L ++A +  G+ NL   I+ A 
Sbjct: 89   MEHKLDEYEREHPDEPKIPRNPTFRLLFGSEFQFERFRLVVIANDTEGWGNLCEFITAAR 148

Query: 105  ---YLRGHVQHQPVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTH 161
                 +G  +          ++H + L V +    G + +A L  +              
Sbjct: 149  NTELPKGEYRVGWEESDVASLQHCQILFVPNRNPGGAMDKATLHEDLLAARAL------- 201

Query: 162  FADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHD 221
            + ++ +L +      D++ +L   ++V EQ  +P+VA  +V          H++  A+ +
Sbjct: 202  YGENLWLAVELFNELDDDLWLVTLMEVGEQAGVPLVAAGDVHMHARSCKPLHDVLTAVRE 261

Query: 222  GYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRL--GEYFLP 279
            G T+ +       + +++LR    + E+   +   L N++ +A RCN    +    Y  P
Sbjct: 262  GKTVAECGFALQSNAQRHLRPRMRLAEIH--LRRMLENTLAVAGRCNFDPEVIRENYKYP 319

Query: 280  NFPTGGMAIE-DFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFP 338
                G        LV K+ EG   R     PD +VRA+        +Q ELD+I  + + 
Sbjct: 320  LETLGSDETPAQTLVRKTWEGARGRYPEGIPD-KVRAQ--------VQKELDIIIDLKYE 370

Query: 339  GYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVS 398
             +FL V   + +++   I +  GRGS A S V + L IT +DP +  LLFERFL+ ER  
Sbjct: 371  MFFLTVENIVSFARSQKI-LCQGRGSSANSAVCFCLGITAIDPTKGHLLFERFLSRERHE 429

Query: 399  MPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDR 458
             PD DVDF   +R++VI ++   YGR   +         +++ +RDVG+ +G     +D 
Sbjct: 430  PPDIDVDFEHQRREEVIQYIYAKYGRHRAAIAAVVICYRSRSALRDVGKAIGIDERLIDE 489

Query: 459  ISKLVPPDPGMTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVIS 518
             +K         L +      A   + + + ++   I+  + L+G  R+  +H GG V++
Sbjct: 490  FAKDHYWFDDTVLGEQLRQAQARVGVVEDELKLVHWIEMTQKLKGFPRHLSQHVGGFVLT 549

Query: 519  PTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKK 578
             T +T   P+   +  +  V Q++K+D+E  G++K D L L  L+ I   L  +N    +
Sbjct: 550  HTRLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIRRGLEHMN----R 605

Query: 579  AGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALF 638
                 + +  IP DD + F  + DA T  VFQ+ESR    ++ RL+P  +ED++  VA+ 
Sbjct: 606  WRGSTIEMHQIPNDDQKVFDMICDADTIGVFQIESRAQMSMLPRLKPRTYEDLVIEVAIV 665

Query: 639  RPGPLQSGMVDNFI-DRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVL 697
            RPGP+Q GMV  ++  R+  R+ +    EK   E L+E LE T GI ++QEQVMQIA + 
Sbjct: 666  RPGPIQGGMVHPYLKQRERVRKGLPIHYEK---EELREALERTLGIPIFQEQVMQIAMIA 722

Query: 698  SGYTLGGADMLRRAMGK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGF 756
            + +T   AD LRRAM   K+   + K       G   NG     A  IF  V  F  YGF
Sbjct: 723  AKFTADEADQLRRAMAAWKRKGGLGKFHDKLVNGMTLNGYKASFAEAIFKQVMGFGDYGF 782

Query: 757  NKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDI 816
             +SH+A++AL+   + WLK + PA F+AA++ +          LV + +  G+ V P D+
Sbjct: 783  PESHAASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEVRPVDV 842

Query: 817  N------------------SGL-----YRFNVDDNGAIVYGIGAIKGVGEGPIEAILEAR 853
                               SG+      R   ++  A+  G+  I G   G +E +L+AR
Sbjct: 843  TRSDFDTTLEAREPDAPRPSGIDERYADRLGNENQPAVRLGLNRIAGFSAGGVERLLKAR 902

Query: 854  NKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHH 913
                 F    D   R +L+                   G   AA+ A+  DA+ + S H 
Sbjct: 903  -AAAPFTSTEDLALRAELE-------------------GKDMAALAAA--DALMSLSGHR 940

Query: 914  QA---EAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYL 970
            +    +A  Q     +L   P  + ++   +P   E   + G+  +L L L  HP+    
Sbjct: 941  RQQVWDATAQRRAPALLRGVP--INEQALLLPAASEGEEIVGDYASLRLTLRRHPLALLR 998

Query: 971  KELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030
              L +       E       Q+    G+V   +   T  GT    +TL+D +G + V+++
Sbjct: 999  PRLARMKLMSAAELRSVPNGQTARACGIVKGRQRPQTANGTI--FVTLEDETGNVNVIVW 1056

Query: 1031 SEALDRYAEWLEKDKILVVSGQVSFDDFNGG 1061
            S  ++ + E L K  +L V G    DD  GG
Sbjct: 1057 SHVIEAWREPLLKSHLLAVQGTWQRDDETGG 1087