Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  949 bits (2453), Expect = 0.0
 Identities = 536/1170 (45%), Positives = 734/1170 (62%), Gaps = 49/1170 (4%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HLR+H++FS+VDG +++   +K  AA   PA+A+TD  NL G VKFY      GVKP+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61

Query: 66   IGADFTLQSEEFGDE---LTKLTLLAKNNVGYKNLTLLISKAYLRGHV--QHQPVIDKAW 120
            IGA+  +     G E   LT++ LL ++  GY NL+ L+++A+ +     Q Q      W
Sbjct: 62   IGAEIFIDG--LGKEPGALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEW 119

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            + E + GLI LSG ++G +G+ LL+G  ++           F   FY+EL R GR ++E 
Sbjct: 120  VQELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPEDEP 179

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            ++  A+ +A +  LPVVAT+ V F   E +EAHE RV I +G  L +PRR + ++ +QY 
Sbjct: 180  HVIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQYF 239

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG------GMAIEDFLVM 294
            +S AEM  LFAD+P ALAN+VEIAKRCN+T+ LG+  LP+FPT        M I+DF   
Sbjct: 240  KSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFFRQ 299

Query: 295  KSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDN 354
            +S EGLE RL  L+PD   R  +R  Y ERL+ E++ I  MGFPGYFLIV +FI+W+K+N
Sbjct: 300  ESFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAKEN 359

Query: 355  DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQV 414
              PVGPGRGSGAGSLVAYALKITDLDPLEY LLFERFLNPERVSMPDFD+DFC   RD+V
Sbjct: 360  GCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRV 419

Query: 415  IDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTL--- 471
            ID+V + YGR+AVSQI TFGTMAA+A IRDVGRVL   + F D ISKL+P  PGM++   
Sbjct: 420  IDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTLQ 479

Query: 472  ---EK---------AFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISP 519
               EK         A   EP L E  + +EEV+ L++  + LEG TRN G HAGGV+I+P
Sbjct: 480  YPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAP 539

Query: 520  TAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKA 579
              +TDF P+Y        V+Q+DK+DVE  GLVKFDFLGL TLTI++ A   +  R K  
Sbjct: 540  GKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHK-- 597

Query: 580  GKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFR 639
            G+     E IPL+DA ++R   +  T AVFQ ESRGM+ ++K  +P   ED+IAL AL+R
Sbjct: 598  GQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657

Query: 640  PGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSG 699
            PGP+   ++ +F+ RKHGRE + YP     H ++ E+L  TYGI++YQEQVMQ AQ+L G
Sbjct: 658  PGPMD--LIPSFVARKHGREEVEYP-----HPAVAEMLSETYGIMVYQEQVMQTAQILGG 710

Query: 700  YTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA-EKNGVDGELAMKIFDLVEKFAGYGFNK 758
            Y+LGGAD+LRRAMGKKK EEMA+ R  F+ GA   +G+  + A +IFDL+EKFAGYGFNK
Sbjct: 711  YSLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNK 770

Query: 759  SHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDEC-KNMGLTVLPPDIN 817
            SH+AAY+L++Y T WLK HY AEF  A MT +MD+T+K+  L ++  KN G+T  PPD+N
Sbjct: 771  SHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVN 830

Query: 818  SGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKR 877
             G YRF    +  I YG+GA+KG G+  +EA++ AR +GG FK LFDFC RID +++NKR
Sbjct: 831  RGNYRFEPVTDRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKR 890

Query: 878  VIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQK 937
             +E LI AGA D +  +RA+++ASVD A   A     A    Q D+FG         E  
Sbjct: 891  TVEALIKAGAFDAIQQNRASLIASVDRAFEFAIA--TAANASQVDIFGDCEHGSATAEPD 948

Query: 938  YTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAG 997
                  W  K RL  E+  +G YL+GH  DE   E+ ++    + +   +R  Q   +AG
Sbjct: 949  LVDATPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQ--VIAG 1006

Query: 998  LVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDD 1057
            +V   RV+  +RG R+ +  LDD+S  ++       ++     L+ D++++VSG++    
Sbjct: 1007 IVSDFRVINGQRG-RLAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPAR 1065

Query: 1058 FNGGLKMSAREVMDLGSAREKFARGLSISILQSQID-QQFFERFSHILEPHRAGT----V 1112
                 +   ++V DL +AR +F + L +++     D  +  + F    E    G     +
Sbjct: 1066 GGFEARFQVQQVWDLATARCRFGKFLRVAVNGKAPDIARLIKDFPPRTEQTEVGDLIQGL 1125

Query: 1113 PVNVYYQRPDARARLTLGTEWRVTPSDTLL 1142
            PV +   R  A+  L LG   +  P+D  L
Sbjct: 1126 PVRLSMARGGAQVELQLGERAKFFPTDAAL 1155