Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1105 a.a., Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  328 bits (842), Expect = 1e-93
 Identities = 286/1069 (26%), Positives = 483/1069 (45%), Gaps = 81/1069 (7%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
            P ++ L++ + FS + G S    L    AAM MPA+ + D  ++ G+V+ +      GV+
Sbjct: 6    PGYVELQVTTHFSFLRGASSPEDLFATAAAMEMPALGVVDRHSVAGIVRAWDAERQTGVR 65

Query: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRG-----HVQHQPVIDK 118
             I+G    L         T L +   +   Y  L  L+S    R      H+    V D 
Sbjct: 66   AIVGCRLDLTDG------TALLVYPTDKAAYGRLCRLLSIGKTRAGKGACHLDWSDVAD- 118

Query: 119  AWLVEHAEGLI-VLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRAD 177
             W     EGL+ +L   ++    +A L   ++            F +  Y+ L    R  
Sbjct: 119  -W----NEGLLAMLVPDRADATTQAALARTKRL-----------FGERTYMALSVRRRPK 162

Query: 178  EESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPK 237
            +   L     +A    +P +ATN+V++   E  +  ++   I +  T++   R +     
Sbjct: 163  DAIRLRDLSRIAAAAGVPTIATNDVLYHVPERRQLQDVVTCIREKCTIDTLGRTRERFAD 222

Query: 238  QYLRSEAEMCELFADI---PEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVM 294
            +YL++ AEM  LF         +A SVE A+RC  ++   +Y  P          D + +
Sbjct: 223  RYLKTGAEMTRLFRRYLKDSSPVARSVEFARRCAFSLDELKYQYP----------DEIQV 272

Query: 295  KSREGLEERLEFLFPDPEVRAKRRPEYDERLQVE--LDVINQMGFPGYFLIVMEFIQWSK 352
              R   EE     +    +R  +  +   R Q+E  L +I Q+ +  YFL V   +  ++
Sbjct: 273  PGRTPQEELERLTWEKAPMRYPQGVDDKVRRQLEHELQLIGQLDYAPYFLTVHAIVAEAR 332

Query: 353  DNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRD 412
              +I +  GRGS A S V Y L IT +DP+  +LLFERF++ ER   PD DVDF  ++R+
Sbjct: 333  RREI-LCQGRGSAANSAVCYVLGITSIDPVRSELLFERFVSAERREPPDIDVDFEHERRE 391

Query: 413  QVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE 472
            +VI  + E YGR   +         A+  +R+VG+ LG      D  + L     G + E
Sbjct: 392  EVIQWIYETYGRTRSALTAVVTRFRARGAVREVGKALGLS---EDVTAGLAGAIWGYSRE 448

Query: 473  KAFIAEPALQELY--DADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYC 530
               + E   QEL    +D  +   +D  R L    R+  +H GG V++   + +  PI  
Sbjct: 449  G--VEEKHAQELNLDLSDTRLALTLDLARQLIDTPRHLSQHPGGFVLTRDRLDELVPIEP 506

Query: 531  DAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIP 590
             A  +  V ++DK+D++  G +K D L L  L+ +  A       L+        +  IP
Sbjct: 507  AAMDDRQVIEWDKDDIDLLGFMKVDVLALGMLSCMRRAFEF----LENDKGLRHDLATIP 562

Query: 591  LDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDN 650
             +D  ++  ++ A T  VFQ+ESR     I  + P  F D++  VA+ RPGP+Q  MV  
Sbjct: 563  AEDPATYAMIRRADTLGVFQIESRAQMASIPLMAPKTFYDLVIQVAIVRPGPIQGDMVHP 622

Query: 651  FIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710
            +  R++G E ++YP E+     L+ +LE T G+ L+QEQ M++A   +G+T   AD+LRR
Sbjct: 623  YRRRRNGEEEVTYPTEE-----LRRVLEKTLGVPLFQEQAMRVAIECAGFTASEADLLRR 677

Query: 711  AMGK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769
            AM   K    ++  R     G    G D E A K F  +E F  YGF +SH+A++AL++Y
Sbjct: 678  AMATFKLTGGVSDFRDKLISGMVSRGYDQEFAEKTFKQIEGFGSYGFPESHAASFALIAY 737

Query: 770  QTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDN- 828
             + W+K H+P  F A+++ A          +V + +  G+ + P D+N+  +   +++  
Sbjct: 738  ASSWMKCHHPDAFCASLLNAQPMGFYAPAQIVRDAREHGVEIRPIDVNASRWDCTLEEGR 797

Query: 829  ---GAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILA 885
                A+  G+   + +      AI+ AR     F  + +   R     V +  ++++  A
Sbjct: 798  GRYKAVRLGLRMARDLANADAAAIVTARGDRP-FTSIEEIQQRAG---VGRGALDRIGDA 853

Query: 886  GALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQAD-MFGVLTDAPEEVEQKYTQVPEW 944
                 LG  R + + +V     AA        F  AD   G L    EE  +    + E 
Sbjct: 854  DGFGSLGADRRSGLWAVKGLGNAA-----LPLFAAADERAGKLR---EEAIEPTVILAEM 905

Query: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004
             E   +  +    GL L  HPV    +EL         +   TR  + + +AGLV+  + 
Sbjct: 906  GEGAEVVEDYRASGLSLRAHPVAFLREELKARRMITCEQLRTTRDGRWIELAGLVLVRQK 965

Query: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053
              + +G  +  +TL+D +    +++++   ++    +    ++ V GQV
Sbjct: 966  PGSAKG--VMFITLEDETDLANLVVWTNVFEKNRRTVLGASMMGVRGQV 1012