Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1180 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  736 bits (1900), Expect = 0.0
 Identities = 445/1068 (41%), Positives = 611/1068 (57%), Gaps = 43/1068 (4%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS   F+ LRI S F+M++G      + K+  A+G PA A+TD   L G + F       
Sbjct: 1    MSHSAFVPLRIFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDGCKGE 60

Query: 61   GVKPIIGADFTLQSEEFGDELTK----LTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVI 116
            GV+PI+GA   +               + L A++  GY N+  L+S A+L   ++  P +
Sbjct: 61   GVQPIVGAMLGVVRPGRPSNAPAVHDWIALYAQDAGGYDNICALVSMAHLDRPLEEVPHV 120

Query: 117  DKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRA 176
                L    +G+I L+ G  G + R   +          +  Q  F D  Y+E+ R    
Sbjct: 121  TLDMLEGRTDGVIALTAGGEGAIARLFAEDQPDAALAYADRLQALFPDRLYVEICRRLDP 180

Query: 177  DEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSP 236
             E       LD+A   +LP+VATN   F   E   AH++ + I DG  +E P R +  SP
Sbjct: 181  VEGKAEPQLLDLAYDRNLPLVATNPTCFAEPEFHAAHDVMLCIADGAYVETPDR-RTSSP 239

Query: 237  KQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVM-K 295
              +++  AEM  LF D+PEALAN++ +A+RC V     +  LP+   G +  E  ++  +
Sbjct: 240  DAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVMAPKRKPILPSL-AGDIEGEGIMLRDQ 298

Query: 296  SREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDND 355
            S  GLE RLE       +  + R  Y ERL+ E+D+I QMGFPGYFLIV +FI+W+KD+D
Sbjct: 299  SIAGLEARLE---KAGIIADEARQPYFERLKFEMDIIIQMGFPGYFLIVADFIKWAKDHD 355

Query: 356  IPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVI 415
            IPVGPGRGSGAGSLVA+AL ITDLDPL+  LLFERFLNPERVSMPDFD+DFC  +R +VI
Sbjct: 356  IPVGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVI 415

Query: 416  DHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVP--PDPGMTLEK 473
             +V + YG D V+QIITFG + A+AV++D GRV+   +G VDR++KLVP  P    TLE+
Sbjct: 416  RYVQQKYGSDHVAQIITFGKLKARAVLKDTGRVMQMSYGQVDRLAKLVPNHPTDPWTLER 475

Query: 474  AFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAE 533
            +       +  YD D +VK LID    LEG  R++  HA GVVI    ++   P+Y D  
Sbjct: 476  SLNGVAEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRDPR 535

Query: 534  GNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDD 593
             + PVTQFD   VE AGLVKFDFLGL+TL+++  A+     +L K     V ++ +  DD
Sbjct: 536  SDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAV-----QLLKGRGVTVDLDTLAWDD 590

Query: 594  ARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFID 653
            A+ +  LQ   T  VFQLES GM++ +  ++P  F DIIALV+L+RPGP+ +  +  F  
Sbjct: 591  AKVYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDN--IPMFGR 648

Query: 654  RKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713
            RK+G+E I YP     H  LK ILE TYGI +YQEQVMQ AQ+L+GY+LG AD+LRRAMG
Sbjct: 649  RKNGQEEIEYP-----HILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMG 703

Query: 714  KKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773
            KK   EM  QR  F EG  K+ +    A ++FDL++KFAGYGFNKSH+AAYAL++YQT W
Sbjct: 704  KKIKAEMDAQRLRFVEGCAKSDIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAW 763

Query: 774  LKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNV-------D 826
            LK HYPAEF A  M  D+  TEK+   VD+ + MG+T LPPD+N     F V       D
Sbjct: 764  LKAHYPAEFYAGSMAFDIHLTEKLTVFVDDMRRMGMTCLPPDLNQSEADFTVEAVPFEGD 823

Query: 827  D---NGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLI 883
            D     A+ Y +G +KGVGE  +E ++  R   G FK L D   RI+ + +N+R +E L 
Sbjct: 824  DPRLGFAVRYALGGLKGVGEKAMEQLVAEREANGPFKHLDDLADRIEPRLLNRRQLESLA 883

Query: 884  LAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPE 943
             AGA D +   RA + A+ +  +  A+   QA   GQ  +FG +  A E+V     Q   
Sbjct: 884  AAGAFDTIHADRAGVHAAAETLLSVAASAAQARESGQGGLFGDVETAHEDVRIPPHQA-- 941

Query: 944  WPEKVRLEGERETLGLYLTGHPVDEY--LKELTKYTS----CRLNEAAPTRRDQSLTV-A 996
            W    R+  E+E  G Y + HPVD +  L +     S    C      P    + + + A
Sbjct: 942  WTVSDRMAQEKEAFGFYFSAHPVDRFRHLADARGAKSYGEICSQPMGMPNAEGRVMGIMA 1001

Query: 997  GLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKD 1044
             +V   R   T+RG R    T  D+SG+ +   + E   +  E L ++
Sbjct: 1002 AMVEDVRWRETRRGARYANATFSDQSGQFQASCFDEDACKQIEELARE 1049