Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

 Score =  368 bits (945), Expect = e-105
 Identities = 314/1092 (28%), Positives = 505/1092 (46%), Gaps = 101/1092 (9%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            M+ P +  L   S+FS   G S    L ++    G  A+A+TD   L G+V+ +  A   
Sbjct: 8    MNTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVH 67

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
             ++ I+G++  L          KL LL +N  GY+NL  LI++A  R       +     
Sbjct: 68   QLRLIVGSEVQLCDGP------KLVLLVENLTGYQNLCALITRARRRAEKGAYQLFRDDL 121

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L+ H   L +     SG+                  + ++ FA+  +L +     +D+  
Sbjct: 122  LLHHQGLLALWVAADSGDTATGA-------------WLRSVFAERLWLAVHLHRGSDDAV 168

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
             L     +A    +  VA  +V           +   AI     + +  R    + +++L
Sbjct: 169  RLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGERHL 228

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN--FPTGGMAIEDFLVMKSRE 298
            RS+A++ EL+    + LA ++ IA+RC   +    Y  P    P G            RE
Sbjct: 229  RSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEGHTPASWL-----RE 281

Query: 299  GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358
              E+ +   +PD      R     + L  EL +I ++G+  YFL V + + +++   I +
Sbjct: 282  LCEQGMPLRWPDGPSGKVR-----DVLAKELGLIEELGYESYFLTVHDIVAFARSQRI-L 335

Query: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 418
              GRGS A S+V + L IT+LDP+++ LLFERFL+ ER   PD DVDF  D+R++VI +V
Sbjct: 336  CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDRREEVIQYV 395

Query: 419  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVP------PDPGMTLE 472
               YGR   +      T  A   +RDV R LG P   VD ++K         PD     E
Sbjct: 396  FRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSDRIPDDQRLAE 455

Query: 473  KAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCD 531
              F A  P+L+ +     E          L G  R+  +H GG VIS   +    P+   
Sbjct: 456  AGFEAGSPSLRRVLVLAGE----------LIGFPRHLSQHPGGFVISQQPLDQLVPVENA 505

Query: 532  AEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPL 591
            A     V Q+DK+D++  GL+K D L L  L+    AL     +L+      + +  IP 
Sbjct: 506  AMPERTVIQWDKDDLDMVGLLKVDVLALGMLS----ALRRCFDQLQHHRGRHLTLATIPS 561

Query: 592  DDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNF 651
            +D  ++  +  A+T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  +
Sbjct: 562  EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 621

Query: 652  IDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711
            + R+  +E ++YP  +     LKE+ E T G+ L+QEQVM++A V + YT G AD LRR+
Sbjct: 622  LRRRLKQEPVTYPSPQ-----LKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRS 676

Query: 712  MGK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770
            M   K+   +   R    +G  +NG     A +IF+ ++ F  YGF +SH+A++AL+ Y 
Sbjct: 677  MAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYA 736

Query: 771  TLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNG- 829
            + WLK H PA F  A++ +          L+ E +  G+ V P D+    +   ++ +  
Sbjct: 737  SSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAE 796

Query: 830  ---AIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886
               AI  G+  ++G+ E   + + +AR++  + +++ D C R  L   + R   +L   G
Sbjct: 797  GTLAIRMGLRLVRGLAEADAKRVQQARSQRPW-RNVEDLCLRAGL---DARARARLADGG 852

Query: 887  ALDRLGPHRAAMMASVDDAVRAASQHHQAE-----AFGQADMFGVLTDAPEEVEQKYTQV 941
            AL  L                 AS  HQA         Q  +F  +   PEE  Q    V
Sbjct: 853  ALRAL-----------------ASDRHQARWQVAAVQPQLPLFADVQALPEEPVQ--LPV 893

Query: 942  PEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCR-LNEAAPTRRDQSLTVAGLVI 1000
            P   E   L  + +TLG  L  HP+   L+   +   CR  +E        ++ VAGLV+
Sbjct: 894  PTVGED--LMADYQTLGTTLGPHPL-ALLRARLRALGCRSSSELQGVEHGDNIAVAGLVV 950

Query: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNG 1060
              +   T  G  +  +TL+D  G + V+++    +R    L   ++L VSG++  +  NG
Sbjct: 951  GRQRPQTASG--VTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRL--EQENG 1006

Query: 1061 GLKMSAREVMDL 1072
               + AR + D+
Sbjct: 1007 VRHLIARRLEDV 1018