Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

 Score = 1310 bits (3389), Expect = 0.0
 Identities = 663/1178 (56%), Positives = 861/1178 (73%), Gaps = 25/1178 (2%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS P F+HLR+HS+FS+VDGL ++ PL K +  M MPA+A+TD +N+C LVKFY TA   
Sbjct: 1    MSVP-FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGA 59

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPI GAD  L   +    L+++  LA +  GY+NLT LIS+ +  G      ++ + W
Sbjct: 60   GIKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREW 119

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            +   +EGLI LS GK G++G ALL G Q + E  ++ +   F + FY+E+ RT RA +E 
Sbjct: 120  IAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEE 179

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            Y+H A+ +A++   P+VATN+V FI +  F+AHE RV I +G+TL+DPRRP+ YS +QYL
Sbjct: 180  YVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYL 239

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREG 299
            +S  EM ELF+D+P+A+AN+VEIAKRCN+ V+LG+YFLP+FPT  GM I+D+L   + EG
Sbjct: 240  KSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEG 299

Query: 300  LEERLEFLFPD---PEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDI 356
            LEERL  L+P    P    KR+  Y +RL+ ELD+I QMGFPGYFLIVM+FI+W+K+ND+
Sbjct: 300  LEERLAVLWPKETTPNYEEKRQV-YLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDV 358

Query: 357  PVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVID 416
            PVGPGRGSGAGSLVAY LKITDLDPL YDLLFERFLNPERVSMPDFDVDFCMD RD+VID
Sbjct: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418

Query: 417  HVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFI 476
            +VAE YGR+AVSQIITFGTMAAKAV+RDV RV G  +G  DR+SK++P + GMTLEKA+ 
Sbjct: 419  YVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYE 478

Query: 477  AEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNF 536
             E  L++    DE+ +E+ D    LEG TR  GKHAGGVVI+PT +TDF+PI CD EG  
Sbjct: 479  QEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGG 538

Query: 537  PVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARS 596
             VTQFDK+DVE AGLVKFDFLGLRTLTII WA+ ++N    K   P + I+ IPLDD ++
Sbjct: 539  LVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKT 598

Query: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656
            +  LQ A+TTAVFQLESRGMKELIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKH
Sbjct: 599  YELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKH 658

Query: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716
            GR  ++YP   +Q+E LK +L PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKK
Sbjct: 659  GRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK 718

Query: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776
            PEEMAKQR  F EG   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLKT
Sbjct: 719  PEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKT 778

Query: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIG 836
            HYPA FMAAV++ADM NT+KVV LV+E ++M L +  PD+N   ++F V+++G IVYG+G
Sbjct: 779  HYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLG 838

Query: 837  AIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPH-- 894
            AIKGVGEGP+EAI+EAR +GG FKDLFDFC RIDLK+VNKR ++ L+ +GALDRLGPH  
Sbjct: 839  AIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFH 898

Query: 895  -------------RAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPE-EVEQKYTQ 940
                         RA +++++ +A++AA Q       G  D+FG + DA + +V   + +
Sbjct: 899  DEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRK 958

Query: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000
            V E   K RL+GE++TLGLYLTGHP+DEY  E+ ++   R+ +  P+R  Q  T+AG++I
Sbjct: 959  VRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQ--TIAGMII 1016

Query: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNG 1060
            A RVM  K+G ++G +TLDDRSGR+E  L+++A       L+ D ++VV G+VS DDF+G
Sbjct: 1017 ALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSG 1076

Query: 1061 GLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQR 1120
            GL++  ++VM +  AR K A  L + +    +     +    ++  HR G  P+ + Y  
Sbjct: 1077 GLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHR-GACPITLEYTG 1135

Query: 1121 PDARARLTLGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158
             DA+A L  G +W + P+D L+  L+   G + V L++
Sbjct: 1136 SDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173