Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1025 a.a., Error-prone DNA polymerase from Pseudomonas sp. RS175

 Score =  357 bits (916), Expect = e-102
 Identities = 301/1058 (28%), Positives = 494/1058 (46%), Gaps = 79/1058 (7%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++  L   S+FS   G S    L ++    G  A+A+TD   L G+V+ +  A    +  
Sbjct: 4    EYAELHCLSNFSFQRGASSALELCRRAKEQGYRALAITDECTLAGIVRAWQAARELDLHL 63

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
            I+G++  ++         KL LL +N  GY+ L  LI++A  R       ++ + +  E 
Sbjct: 64   IVGSEIQVEHGP------KLVLLVENLEGYQALCRLITRARRRSEKGRYRIVREDF-DEP 116

Query: 125  AEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF 184
              GL+ L           +  GN  + +    + Q+ FA   +L +      D+   L  
Sbjct: 117  LPGLLALW----------VPDGNDAEAQG--RWLQSIFAGRLWLSVQLHCGQDDRQRLAD 164

Query: 185  ALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEA 244
             L +A +  L  VAT +V           +   AI    T+ +  +  + + +++LRS  
Sbjct: 165  LLALAGRLGLAAVATGDVHMHVRGRRALQDTMTAIRYHVTVAEAGQRLHPNGERHLRSRK 224

Query: 245  EMCELFADIPEALAN-SVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMKSREGLEE 302
            ++  L+   P AL + ++ IA+RC   +    Y  P+     G     +L   +  G+ +
Sbjct: 225  DLAGLY---PRALLDETLHIARRCTFDLGQLRYQYPHELVPEGHDPTSWLRELTERGMRK 281

Query: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
            R      D   R         +++ EL++I ++G+  YFL V + + ++++  I +  GR
Sbjct: 282  RWGGGVNDKVRR---------QIETELELIAELGYDSYFLTVQDIVSFARERHI-LCQGR 331

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GS A S V YAL IT++DP   +LLFERFL+ ER   PD DVDF  ++R++V+ +V   Y
Sbjct: 332  GSAANSAVCYALGITEIDPGRTNLLFERFLSRERNEPPDIDVDFEHERREEVLQYVFRRY 391

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482
            GR   +      +      +RDV + LG P    D+I+ L     G   ++A   E   +
Sbjct: 392  GRHRAALTAVVSSYHGAGAVRDVAKALGLP---PDQINALA-DCCGRWSDEAPPLERLRE 447

Query: 483  ELYDADEEV-KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQF 541
              +D D  V + ++   R L G  R+  +H GG VIS   +    P+   A     + Q+
Sbjct: 448  GGFDPDSPVLQRVLGLTRQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAAMAERTIIQW 507

Query: 542  DKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQ 601
            DK+D++  GL+K D L L  L+ I     L+     +       + ++P DD  +F  + 
Sbjct: 508  DKDDLDAVGLLKVDILALGMLSAIRRCFDLIEGYRGQR----YTLASLPHDDKATFDMIS 563

Query: 602  DAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAI 661
             A T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R++  E +
Sbjct: 564  RADTIGVFQIESRAQMAMLPRLKPKDFYDLVIEVAIVRPGPIQGGMVHPYLKRRNDEEPV 623

Query: 662  SYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEM 720
            +YP  +     LK +L  T GI L+QEQVMQIA V + YT G AD LRR+M   K+   +
Sbjct: 624  TYPSPE-----LKTVLGRTLGIPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRHGGL 678

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
               R     G +KNG   E A +IF+ ++ F  YGF +SH+A++AL++Y + WLK H PA
Sbjct: 679  EPHRERLAAGMKKNGYTAEFAAQIFEQIKGFGNYGFPESHAASFALLTYASSWLKCHEPA 738

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDD----NGAIVYGIG 836
             F  A++ +          ++ + +   L + P D+ +  +  +++       AI  G+ 
Sbjct: 739  AFACALINSWPMGFYSPDQILQDARRHQLQIRPVDVRASDWDCSLEPLEGRQPAIRMGLR 798

Query: 837  AIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRA 896
             IKG  E     I EA  +   F D+ D   R  L   + R +E+L  AGAL  L     
Sbjct: 799  QIKGFREEDARRI-EAARRQRAFGDVADLGERAQL---DTRALEQLADAGALRGL----- 849

Query: 897  AMMASVDDAVRAASQHHQA--EAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGER 954
                        A   H+A  E  G     G+    P + E+    +P+      L  + 
Sbjct: 850  ------------AGDRHRARWEVAGVQKQLGLFAGLPNQ-EEPPVSLPKPSVGENLFADY 896

Query: 955  ETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIG 1014
             TLG  L  HP+     EL         E       ++++VAGLV   +   T  G  + 
Sbjct: 897  ATLGTTLGPHPLALLRPELRARRCRSSRELQEVEHGRNVSVAGLVTGRQRPGTASG--VT 954

Query: 1015 LMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQ 1052
             +TL+D  G + V+++ +  +R  + L   ++L V G+
Sbjct: 955  FVTLEDEFGNLNVVVWRDLAERQRKVLVGSQLLKVDGR 992