Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1188 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  966 bits (2498), Expect = 0.0
 Identities = 537/1201 (44%), Positives = 746/1201 (62%), Gaps = 61/1201 (5%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F HLR+H++FS+VDG +++  +V   AA G PA+A+TD +NL G VKFY  A   GVKPI
Sbjct: 2    FTHLRLHTEFSVVDGTNRIDDVVAAAAADGQPALAITDLSNLFGAVKFYKEARGAGVKPI 61

Query: 66   IGADFTLQSEEFGDE------------LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113
            IGA+  LQ   F +E            + +  LL ++  GY NL+ L+++A+ R   + Q
Sbjct: 62   IGAEVLLQG--FTEETPGAMPGSQQAPVPRALLLVQDKQGYLNLSELLARAWTRNDGRGQ 119

Query: 114  PVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRT 173
             ++ + WL E   GLI++SG ++G VG+AL++G+ Q+         + F   FY+EL R 
Sbjct: 120  ALVQRDWLQECNAGLIMISGAQAGPVGQALMQGDAQRAADVALQLSSIFTHRFYIELQRA 179

Query: 174  GRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKN 233
            GRAD+E ++  A+ +A +  LPVVAT+ V F+  + +EAHE RV I +G  L + RR + 
Sbjct: 180  GRADDERHVAQAVQLAARLHLPVVATHPVQFLEADDYEAHEARVCIAEGEILGNNRRVRR 239

Query: 234  YSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAI 288
            ++ +QY +S A+M  LFAD+P ALANSVEI +RCN+T+ LG+  LPNFPT       M +
Sbjct: 240  FTREQYFKSAAQMQALFADVPSALANSVEIVRRCNLTLVLGKPQLPNFPTPLIDGVPMPM 299

Query: 289  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFI 348
             DF    S EGLEERL  L+PD   R   RP Y ERL+ E++ I  MGFPGYFLIV +FI
Sbjct: 300  ADFFRQSSFEGLEERLAHLYPDTAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGDFI 359

Query: 349  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCM 408
             W+K+N  PVGPGRGSGAGSLVAYALKITDLDPL+Y+LLFERFLNPERVSMPDFD+DFC 
Sbjct: 360  NWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 419

Query: 409  DKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG 468
              RD+VID+V + YG++AVSQI TFGT+AA+A IRDVGRVL   +GF D ISKL+P  PG
Sbjct: 420  TNRDRVIDYVKDKYGKEAVSQIATFGTLAARAAIRDVGRVLDFSYGFCDGISKLIPNKPG 479

Query: 469  MTL---------------EKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAG 513
            M++                 A   EP L E    +++VK LI+  + LEG TRN G HAG
Sbjct: 480  MSVTLQYPPAQKKEGDKNNYAIEMEPVLAERIQKEDDVKTLIELAQKLEGMTRNIGMHAG 539

Query: 514  GVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVN 573
            GV+I+P  +TDF P+Y        V+Q+DK+DVE  GLVKFDFLGL TLTI++ A   + 
Sbjct: 540  GVLIAPGKLTDFCPLYAQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIM 599

Query: 574  PRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIA 633
             R    G+   R E +PL+DA+ +      +T AVFQ ESRGM+ ++K  +P   ED+IA
Sbjct: 600  KR--HPGQENFRFEDVPLNDAKVYALFSRGQTEAVFQFESRGMQGMLKDAKPSRLEDLIA 657

Query: 634  LVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQI 693
            L AL+RPGP+   ++ +F++RKHG+E I YP     H  + E+L  TYGI++YQEQVMQ 
Sbjct: 658  LNALYRPGPMD--LIPSFVNRKHGKETIEYP-----HPLVAEMLSETYGIMVYQEQVMQT 710

Query: 694  AQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAG 753
            AQ+L GY+LGGADMLRRAMGKKK EEMA+ R +F+ GA KN +  E A ++FDL+EKFAG
Sbjct: 711  AQILGGYSLGGADMLRRAMGKKKAEEMAEHREIFRAGAAKNDISQEKADEVFDLMEKFAG 770

Query: 754  YGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLP 813
            YGFNKSH+AAY+L++Y T WLK HY AEF  A MT +MD+T+K+  L ++ + MG++   
Sbjct: 771  YGFNKSHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGISFEA 830

Query: 814  PDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEAR---------NKGGYFKDLFD 864
            PD+N G +RF    N +I YG+GAIKG G+  IEAI+ AR         ++ G FK LFD
Sbjct: 831  PDVNRGFHRFEPITNKSIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGDETGPFKSLFD 890

Query: 865  FCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVR-AASQHHQAEAFGQADM 923
            FC R+D  ++NKR +E LI AGA D +  +RA M+ASVD A   AA+    A   G  DM
Sbjct: 891  FCVRVDRTRLNKRTVEALIKAGAFDSMNLNRAEMLASVDRAFEFAAATLANANQGGLFDM 950

Query: 924  FGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNE 983
             G         E        W  K RL  E+  +G Y +GH  DE  +E+ ++    L +
Sbjct: 951  MGDDDHGSSTQEPDLVATMPWGVKERLTLEKTAMGFYFSGHLFDEVQREVRRFARTPLGD 1010

Query: 984  AAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEK 1043
               +R    + +AG+V   RV+  +RG ++ L  LDD++G  E       ++ +   L+ 
Sbjct: 1011 VVESR--DPVILAGIVTDFRVINGQRG-KLALFKLDDKTGVFETSADENLINMHRNLLKD 1067

Query: 1044 DKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFARGLSISI-----LQSQIDQQFFE 1098
            D+++VV      D F+GG+++  +++ DL +AR +F + L +++       + + ++F  
Sbjct: 1068 DELIVVQAVAQPDRFSGGVRLKIQQIWDLAAARCRFGKYLRVAVNGTAPSVAALVREFPP 1127

Query: 1099 RFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158
            +     +      +PV +   R  A+  L L       P+D  L          + E+ F
Sbjct: 1128 KREVTEQGELVRGLPVRLALLREGAQCELQLDDRALFFPTDAALASWMAQAHEQRAEIVF 1187

Query: 1159 N 1159
            +
Sbjct: 1188 D 1188