Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1035 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  365 bits (937), Expect = e-104
 Identities = 300/1067 (28%), Positives = 516/1067 (48%), Gaps = 89/1067 (8%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
            P ++ LR  S+FS + G S    LV++ AA+G  A+AL D  +L G+V+ +  A     +
Sbjct: 7    PDYVELRCLSNFSFLRGASHPEELVERAAALGYQALALVDECSLAGVVRAHVAAKKHRFQ 66

Query: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHV---QHQPVIDKAW 120
             +IG+ F ++     D    L +LA N  GY NL   I++  LR       ++  I    
Sbjct: 67   LLIGSQFQVRC----DAPFTLVVLACNLNGYGNLCEFITR--LRRSAPKGSYRLAIGDID 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
                A+ +++    +  +         Q  ++    +   HF    +L + +  R D+E 
Sbjct: 121  AQALADCVVIAVPDRHSD---------QDPMDTVARWLLQHFRGRCWLGVEQLCRFDDEM 171

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
             LH     +E   +P+VA  +V          H++  A   G  L +       S +Q L
Sbjct: 172  RLHRLRQSSELTAVPLVAVGDVRMHVRSRKPLHDVLTATRIGKPLTECGFVLEPSAEQRL 231

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            R    + +L+    + LA ++ +A RC+ ++    Y  P+            V+   E  
Sbjct: 232  RGRLTLGQLYP--ADLLAETLAVAARCDFSLDELRYQYPSE-----------VIPEGETP 278

Query: 301  EERLEFLFPDPEVRAKRR-----PE-YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDN 354
            +  L  L    E  A+RR     PE + ++++ EL++I    +  YFL V + + +++  
Sbjct: 279  QSHLRQL---TEAGARRRWPQGTPEAFAQQIEHELELIAYKQYEHYFLTVHDIVAFARSK 335

Query: 355  DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQV 414
            DI +  GRGS A S+V Y L IT++DP    LLFERF++ ER   PD DVDF  ++R++V
Sbjct: 336  DI-LCQGRGSAANSVVCYCLGITEVDPGRTGLLFERFISRERDEPPDIDVDFEHERREEV 394

Query: 415  IDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKA 474
            I ++   YGR+  +   T  +   ++ +RDVG+ LG   G +D +++          +  
Sbjct: 395  IQYLYGKYGRERAALTATVISYRPRSALRDVGKALGFAEGSLDVLAR-----QSRWWDGH 449

Query: 475  FIAEPALQE--LYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDA 532
             IA   LQE  L   D +V++L++    L G  R+  +H GG V++   ++   PI    
Sbjct: 450  AIAPERLQEAGLDTGDLKVRQLLELTSTLMGFPRHLSQHTGGFVLTQLPLSRLVPIENAT 509

Query: 533  EGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLD 592
              +  V ++DK+D++  GL+K D L L  LT +  A+ L+  +  +A      ++ IP  
Sbjct: 510  MKDRTVIEWDKDDLDAVGLLKVDVLALGMLTALRKAMALIGEKQGRA----FGMQDIPDG 565

Query: 593  DARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFI 652
            D  ++  +  A T  VFQ+ESR    ++ RL+P  + D++  VAL RPGP+Q G V  ++
Sbjct: 566  DDPTYDMVCAADTVGVFQIESRAQMSMLPRLRPRSYYDLVIEVALVRPGPIQGGAVHPYL 625

Query: 653  DRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712
            +R+ G+  +S+P       +LK  L  T G+ ++QEQ MQIA + +G+T G AD LRRAM
Sbjct: 626  NRRQGKVPVSFPGPH-GGRALKAALGRTMGVPIFQEQCMQIAVLSAGFTPGEADELRRAM 684

Query: 713  GK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771
               K+   + K      +G    G + E A  IF+ ++ F+ YGF +SH+A++AL+ Y +
Sbjct: 685  AAWKRHGNVQKYEERLVKGMTDRGYELEFAQSIFEQIKGFSSYGFPESHAASFALLVYVS 744

Query: 772  LWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAI 831
             W+K H+PAEF+ A++ +          LV + K  G+ V P D+        +D +GA+
Sbjct: 745  AWIKCHHPAEFLTALLNSQPLGFYTPSQLVQDAKRHGVVVRPVDVLHSDRDSTIDADGAV 804

Query: 832  VYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRL 891
              G+  + G+G+   E I++AR +   F++  D   R  L +                  
Sbjct: 805  RLGMRLVSGIGQDATERIVQARAQQA-FRNAQDLARRAGLDQ------------------ 845

Query: 892  GPHRAAMMASVDDAVRAASQHHQAEAFGQADMF---GVLTDAPEEVEQKYTQVPEWPEKV 948
             P   A+ A+  DA+   S H + + +  A +     +L  AP  V++    +P  PE  
Sbjct: 846  -PQMKALAAA--DALMGLSGHRRQQVWDAAALRSPPALLKGAP--VDEAPLALPAAPEGE 900

Query: 949  RLEGERETLGLYLTGHPVDEYLKELTK---YTSCRLNEAAPTRRDQSLTVAGLVIAARVM 1005
             +  +  + GL L  HP+    +EL K    T+ +L +A   R    +   G+V   +  
Sbjct: 901  AVVWDYASTGLTLRRHPLALLREELAKRRLMTAAQLQDAPDGR---LVRHCGIVTLRQQP 957

Query: 1006 TTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQ 1052
             T  G  +  ++L+D +G ++V+++    +R    L   ++L V G+
Sbjct: 958  GTSSG--VVFVSLEDETGVVQVIVWQRIRERQRAVLTGARLLAVYGR 1002