Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1022 a.a., error-prone DNA polymerase from Magnetospirillum magneticum AMB-1

 Score =  386 bits (991), Expect = e-111
 Identities = 302/1079 (27%), Positives = 508/1079 (47%), Gaps = 71/1079 (6%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            +  L+  S+++ ++G S    L    +A+G+ A+A+ D   L G+V+ +  A   G++ +
Sbjct: 4    YAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRLV 63

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
            +GA   L           L     +   Y  L+ L++    R   + +  + +A + EHA
Sbjct: 64   VGARLDLTDG------ASLLCFPTDRAAYGRLSRLLTLGRRRAP-KGECHLARADVAEHA 116

Query: 126  EG-LIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF 184
            EG ++VL      E G A      Q  E     ++T   D  YL   R  R D+   L  
Sbjct: 117  EGQILVLIAPDPLEEGFAA-----QLAE-----WRTVVGDRLYLAATRRFRGDDGERLR- 165

Query: 185  ALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEA 244
               V   + +P+VATN+V++ T       ++   I  G TL       +   +++L+S A
Sbjct: 166  ---VLAGFGIPLVATNDVLYHTPARRPLADVLTCIRQGTTLAAAGWALSAHGERHLKSPA 222

Query: 245  EMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGLEERL 304
            EM  LFA  PEALAN +E+ +RC  ++    Y  PN    GM  ++ L + +R+G   R 
Sbjct: 223  EMARLFAACPEALANGLEVVRRCRFSLDELAYEYPNEVAAGMDPQERLEILTRQGAARRY 282

Query: 305  EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 364
                P         P+   +L  EL +I Q+GF  YFL V   + +++   I +  GRGS
Sbjct: 283  PRGVP---------PKVQAQLAHELALIRQLGFAPYFLTVHAIVAFAESRGI-LCQGRGS 332

Query: 365  GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 424
             A S V Y L++T +DP + DLLFERF++ ER   PD DVDF  ++R++VI H+ + YGR
Sbjct: 333  AANSAVCYCLRVTPVDPAQMDLLFERFISAERGEPPDIDVDFEHERREEVIQHIYDTYGR 392

Query: 425  DAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQEL 484
                   T      ++ IRDVG+V+G     V+ ++K         ++   + E  L   
Sbjct: 393  HRAGLTATVIHYRTRSAIRDVGKVMGLSEDTVEALAKANSGWGRRGIKDEHVRELGLD-- 450

Query: 485  YDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKN 544
               +  +   +     L G  R+  +H GG VIS   + +  PI      +  V Q+DK+
Sbjct: 451  -PTEPGLARTLSLAEELTGFPRHLSQHVGGFVISKGRLDELVPIENAGMEDRTVIQWDKD 509

Query: 545  DVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAK 604
            D++  GL+K D L L  L+ I  A  L    L+      + +  +P +DA ++  L  A 
Sbjct: 510  DLDALGLMKVDVLALGMLSCIRKAFDL----LRLHHGRDLCLATLPREDASTYDMLCKAD 565

Query: 605  TTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYP 664
               VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R+ G+E + YP
Sbjct: 566  AVGVFQVESRAQMSMLPRLRPRRFYDLVVEVAIVRPGPIQGGMVHPYLRRRQGKETVDYP 625

Query: 665  DEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQ 723
             E+     L+++L  T G+ L+QEQ M+IA V +G+T   AD LRRAM   +   ++   
Sbjct: 626  SEE-----LRQVLGKTLGVPLFQEQAMKIAMVAAGFTASEADGLRRAMATFRHTGQVGAY 680

Query: 724  RAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFM 783
                  G    G + + A ++F  +E F  YGF +SH+AA+A + Y + WLK HYPA F 
Sbjct: 681  GDKLIGGMVARGYERDFAERVFKQIEGFGEYGFPESHAAAFAHLVYVSAWLKCHYPAAFA 740

Query: 784  AAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGE 843
             A++ +          +V +  + G+ + P D+N   +   ++   A+  G+  + G+  
Sbjct: 741  CALLNSQPMGFYAPAQIVRDAADHGVEIRPVDVNHSDWDCTLEGK-ALRLGLRQVSGLAR 799

Query: 844  GPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVD 903
               E +  AR  G  +   +       L++     +++L  A A   +G  R        
Sbjct: 800  RDGERLAAARGAG--YASAYGLWRTSGLERA---ALDRLAAADAFGSMGLGR----REAA 850

Query: 904  DAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTG 963
             A++A            A    +  +AP   E K   +P       + G+   L L L  
Sbjct: 851  WAIKAL----------DAPPLPLFEEAPPPPEAK-VALPPASVGEEVVGDYAALKLSLKC 899

Query: 964  HPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSG 1023
            HP+   L++  +      N +   R+   + V+GLV+  +   +  G  +  +TL+D +G
Sbjct: 900  HPL-AVLRDPFRVLGIMTNASLKDRKGGRVAVSGLVLVRQRPGSANG--VLFITLEDETG 956

Query: 1024 RMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFARG 1082
               ++++ +  + +   +    +L V G+V  +D  G + + A ++ DL +     ARG
Sbjct: 957  IANIVVWPDMFETFRRPILGGHLLRVDGRVQSED--GVIHVVAEKIEDLSAHLGALARG 1013