Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1154 a.a., DNA polymerase III subunit alpha from Magnetospirillum magneticum AMB-1

 Score =  841 bits (2173), Expect = 0.0
 Identities = 495/1174 (42%), Positives = 696/1174 (59%), Gaps = 52/1174 (4%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HLR+H+ +S+ +G  K+  L+K      MPA+ +TD  NL G ++F ++  + G++PI
Sbjct: 7    FVHLRVHTAYSLAEGAIKLKQLIKLCEKAAMPAVGITDTANLFGALEFSTSCSDAGIQPI 66

Query: 66   IGADFTLQSEEFGD-------ELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDK 118
            +GA   ++ E+ G        E   L LL +N  GY NL  L+SKA+L       P +  
Sbjct: 67   VGAQIAIRREDGGPSKDGRKPEPDTLVLLCQNEAGYLNLLKLVSKAFLETDAGETPQVTL 126

Query: 119  AWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE 178
              L   ++GLIVL+GG +G VGR L  G  ++ E  +      FA   Y+EL+R     E
Sbjct: 127  HDLETRSDGLIVLTGGPAGPVGRLLADGQTEKAEIVLARLARAFAGRCYVELMRHNLEVE 186

Query: 179  ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDG-YTLEDPRRPKNYSPK 237
            +      + +A ++DLP+VATNE  F     +EAH+  V I +G Y  +D RR    +P+
Sbjct: 187  DRIEPLLVSLAYKHDLPLVATNEAFFADRGMYEAHDALVCIAEGAYISQDERR--RLTPE 244

Query: 238  QYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSR 297
             Y +S  EM  LFAD+PEA  N++ IA+RC   V   +  LP +   G+   + L  K+ 
Sbjct: 245  HYFKSPEEMRALFADLPEACDNTLVIARRCAFGVAKRKPILPPYRMDGLTEAEVLRKKTW 304

Query: 298  EGLEERLE-FLFP----DPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSK 352
            EGLE RLE  +F     D E     +P Y ER++ EL+VI +MGFPGYFLIV +FIQWSK
Sbjct: 305  EGLEARLEKHVFKEGMTDDEKEHAAKP-YRERIEFELNVIEEMGFPGYFLIVSDFIQWSK 363

Query: 353  DNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRD 412
              +IPVGPGRGSGAGS VA+AL ITDLDPL + LLFERFLNPERVSMPDFD+DFC D+R+
Sbjct: 364  AQEIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDFCQDRRE 423

Query: 413  QVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MT 470
            + I +V   YG   V+QIITFG + A+AV+RDVGRVL  P+G VDRI KLVP +P   MT
Sbjct: 424  ETIRYVQGKYGYSQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKLVPNNPANPMT 483

Query: 471  LEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYC 530
            LE+A  +EP L+E  + DE V  LID    LEG  R+A  HA GVVI    + +  P+Y 
Sbjct: 484  LEQALESEPLLKEQKERDEAVSHLIDLAMKLEGLYRHASTHAAGVVIGDRPLDELVPLYR 543

Query: 531  DAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIP 590
            D   + PVTQF+   VE+AGLVKFDFLGL+TLT++  A+      +KK     + + AIP
Sbjct: 544  DPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAV----KHVKKTKGIDIDLSAIP 599

Query: 591  LDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDN 650
            LDDA+S+  L       VFQLES GM+++++++ P+  ED+IA+VAL+RPGP+    +  
Sbjct: 600  LDDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGPMD--QIPR 657

Query: 651  FIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710
            +I  KHG+E    PD  + H  L+ IL+ T+GI++YQEQVMQIAQVLSGY+LGGAD+LRR
Sbjct: 658  YIACKHGKEE---PD--YMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRR 712

Query: 711  AMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770
            AMGKK  EEM +QRA F EGA    VDG  A  IFD V KFA YGFNKSH+AAYAL++YQ
Sbjct: 713  AMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKVAKFAEYGFNKSHAAAYALIAYQ 772

Query: 771  TLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNV----D 826
            T WLK +YPAEFMAA MT +M NT+K+     E   +G+ +LPPDIN+    F+V    D
Sbjct: 773  TAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLPD 832

Query: 827  DNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886
               A+ Y + A+K VGE  ++++++ R +GG FKD+ DF AR+D K +N+R +E ++ AG
Sbjct: 833  GGSAVRYALAALKNVGEAAMKSLVDERERGGRFKDVGDFAARMDSKVLNRRQLENMVKAG 892

Query: 887  ALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPE 946
              D L  +R  +  + D   R A+   +     Q  + G  ++AP     K    P+W  
Sbjct: 893  VFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQMSLLGG-SNAP---TLKLESGPDWSP 948

Query: 947  KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQS-----LTVAGLVIA 1001
              +L  E E +G YL+ HP+D Y K + +    ++ E    R  QS     + +AG +++
Sbjct: 949  HEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAEL--PRHLQSGGKGRVRLAGSLLS 1006

Query: 1002 ARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGG 1061
             +   + +G+R   +   D SG  EV  +SE L    E L+    L++      ++    
Sbjct: 1007 KQERVSAKGSRYAFLQFSDASGMFEVTCFSEILATSRELLDAGGPLLIDVDAKLEE--DQ 1064

Query: 1062 LKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRP 1121
            L+M+ + +  L     K A G+ + I     D     + + ++     G   V +   R 
Sbjct: 1065 LRMTCQRIASLDQEAAKAAAGIRVII----SDDSAIRQLADLINGEARGRNLVRI-VARA 1119

Query: 1122 DARARLTLGTEWRVTPSDTLLDELKQLLGHDQVE 1155
            D R  + LG +  +T S   +  L+ + G  +VE
Sbjct: 1120 DNR-EVELGLKSNITLSPKFMGSLRSIPGIAEVE 1152