Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., DNA-directed DNA polymerase III (polc) from Enterobacter asburiae PDN3

 Score = 1807 bits (4680), Expect = 0.0
 Identities = 876/1160 (75%), Positives = 1014/1160 (87%), Gaps = 1/1160 (0%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            M++P+F+HLR+HSD+SM+DGL+K  PLVKK A++GMPA+A+TDFTNLCGLVKFY TAH  
Sbjct: 1    MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGA 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPI+GADF +QS+  GDE+T++++LA NN GY+NLTLLISKAY RG+    P ID+ W
Sbjct: 61   GIKPIVGADFHVQSDLIGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDW 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L E  EGL+++SGG+ G+VG+ LL+GN   V++C+ FY+ +F D +YLELIRTGR DEES
Sbjct: 121  LAELNEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRTGRQDEES 180

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            YLH A+ +AE+  LPVVATN+V F+    F+AHEIRVAIHDG+TL+DP+RP+NYS +QY+
Sbjct: 181  YLHAAVALAEERGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM 240

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            RSE EMCELF+DIPEAL NSVEIAKRCNVTVRLGEYFLP FPTG M  EDFLV+KS+EGL
Sbjct: 241  RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVVKSKEGL 300

Query: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
            EERLEFLFPD  VR ++RP YDERL +EL VINQMGFPGYFLIVMEFIQWSKDN +PVGP
Sbjct: 301  EERLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+KRDQVI+HVA+
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480
            MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP+GFVDRISKLVPPDPGMTL KAF AEP 
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ 480

Query: 481  LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
            L E+Y+ADEEVK LID  R LEG TRNAGKHAGGVVI+PT ITDFAP+YCD  G  PVTQ
Sbjct: 481  LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGEHPVTQ 540

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            FDKNDVE AGLVKFDFLGLRTLTIIDWAL ++NPR +K G  P+ I AIPLDD +SF  L
Sbjct: 541  FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEPIDIAAIPLDDKKSFDML 600

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
            Q ++TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFIDRKHGRE 
Sbjct: 601  QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720
            ISYPD +WQHESLK +LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
Sbjct: 661  ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
            AKQR++F++GA+KNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK HYPA
Sbjct: 721  AKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
            EFMAAVMTADMDNTEKVVGLVDEC  MGL +LPPDINSGLY F+V+D+G IVYGIGAIKG
Sbjct: 781  EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900
            VGEGPIEAI+EARN GGYF++LFD CAR D KK+N+RV+EKLI++GA DRLGPHRAA+M 
Sbjct: 841  VGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900

Query: 901  SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960
            S+ DA++AA QH +AEA GQADMFGVL + PE++EQ Y+    WPE+V L+GERETLGLY
Sbjct: 901  SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVVLDGERETLGLY 960

Query: 961  LTGHPVDEYLKELTKYT-SCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1019
            LTGHP+++Y+KE+ +Y    RL +  PT R +  T AGLVIAARVM TKRG RIG+ TLD
Sbjct: 961  LTGHPINQYIKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVMVTKRGNRIGICTLD 1020

Query: 1020 DRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKF 1079
            DRSGR+EVML+++ALD+Y + LEKD+IL+VSGQVSFDDF+GGLKM+AREVMD+  AREK+
Sbjct: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080

Query: 1080 ARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSD 1139
            ARGL+IS+   QID Q   R    LEPHR+GT+PV++YYQR DARARL  G  WRV+PSD
Sbjct: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140

Query: 1140 TLLDELKQLLGHDQVELEFN 1159
             LL++L+ L+G +QVELEF+
Sbjct: 1141 RLLNDLRGLIGSEQVELEFD 1160