Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., DNA polymerase III subunit alpha from Escherichia coli ECRC62

 Score = 1819 bits (4711), Expect = 0.0
 Identities = 882/1160 (76%), Positives = 1014/1160 (87%), Gaps = 1/1160 (0%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS+P+F+HLR+HSD+SM+DGL+K  PLVKK AA+GMPA+A+TDFTNLCGLVKFY   H  
Sbjct: 1    MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPI+GADF +Q +  GDELT LT+LA NN GY+NLTLLISKAY RG+    P+ID+ W
Sbjct: 61   GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L+E  EGLI+LSGG+ G+VGR+LL+GN   V+ C+ FY+ HF D ++LELIRTGR DEES
Sbjct: 121  LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            YLH A+++AE   LPVVATN+V FI    F+AHEIRVAIHDG+TL+DP+RP+NYSP+QY+
Sbjct: 181  YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            RSE EMCELFADIPEALAN+VEIAKRCNVTVRLGEYFLP FPTG M+ ED+LV +++EGL
Sbjct: 241  RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300

Query: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
            EERL FLFPD E R KRRPEYDERL+ EL VINQMGFPGYFLIVMEFIQWSKDN +PVGP
Sbjct: 301  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+KRDQVI+HVA+
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480
            MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP+GFVDRISKL+PPDPGMTL KAF AEP 
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480

Query: 481  LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
            L E+Y+ADEEVK LID  R LEG TRNAGKHAGGVVI+PT ITDFAP+YCD EG  PVTQ
Sbjct: 481  LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            FDK+DVE AGLVKFDFLGLRTLTII+WAL ++N R  K G+PP+ I AIPLDD +SF  L
Sbjct: 541  FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
            Q ++TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFIDRKHGRE 
Sbjct: 601  QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720
            ISYPD +WQHESLK +LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
Sbjct: 661  ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
            AKQR+VF EGAEKNG++ ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK HYPA
Sbjct: 721  AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
            EFMAAVMTADMDNTEKVVGLVDEC  MGL +LPPDINSGLY F+V+D+G IVYGIGAIKG
Sbjct: 781  EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900
            VGEGPIEAI+EARNKGGYF++LFD CAR D KK+N+RV+EKLI++GA DRLGPHRAA+M 
Sbjct: 841  VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900

Query: 901  SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960
            S+ DA++AA QH +AEA GQADMFGVL + PE++EQ Y     WPE+V L+GERETLGLY
Sbjct: 901  SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960

Query: 961  LTGHPVDEYLKELTKYT-SCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1019
            LTGHP+++YLKE+ +Y    RL +  PT R + +T AGLV+AARVM TKRG RIG+ TLD
Sbjct: 961  LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020

Query: 1020 DRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKF 1079
            DRSGR+EVML+++ALD+Y + LEKD+IL+VSGQVSFDDF+GGLKM+AREVMD+  AREK+
Sbjct: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080

Query: 1080 ARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSD 1139
            ARGL+IS+   QID Q   R    LEPHR+GT+PV++YYQR DARARL  G  WRV+PSD
Sbjct: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140

Query: 1140 TLLDELKQLLGHDQVELEFN 1159
             LL++L+ L+G +QVELEF+
Sbjct: 1141 RLLNDLRGLIGSEQVELEFD 1160