Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1002 a.a., translesion DNA polymerase (imuC-like) (from data) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  242 bits (617), Expect = 1e-67
 Identities = 181/576 (31%), Positives = 283/576 (49%), Gaps = 43/576 (7%)

Query: 322 DERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDP 381
           + R+  ELD+I Q  F  YFLI  E ++++++       GRGSGA S+VAY L ITD+DP
Sbjct: 268 ETRILKELDIIRQKDFVSYFLINYEIVKFARERGFYY-VGRGSGANSIVAYCLNITDVDP 326

Query: 382 LEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYG---RDAVSQIITFGTMAA 438
           +E DL FERF+N  R + PDFD+DF    RD+VI H+   +     + V  + T  T   
Sbjct: 327 IELDLYFERFINLYRSTPPDFDIDFSWRDRDEVIQHIFHKHNTEDHEHVCLLATHNTFQI 386

Query: 439 KAVIRDVGRVLGHPFGFVDR-ISKLVPPDPGMTLEKAFIAEPALQELYDADEEVKELIDK 497
            + IR++G+V G P   ++  I+ +V P                   Y  D     ++  
Sbjct: 387 NSSIRELGKVFGLPKTDIEALINHVVKPGN-----------------YIPDRIGALVLKY 429

Query: 498 CRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFL 557
            +++ G   +   HAGG++IS   I  +       +G FP++ FD    E  G  KFD L
Sbjct: 430 SQLIHGMPSHLSIHAGGILISQQPIHYYTATDLPPKG-FPISHFDMVTAEEIGFAKFDIL 488

Query: 558 GLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIP--LDDARSFRNLQDAKTTAVFQLESRG 615
             R L  I  +L ++    K  GK  V I  I     D +  ++L+   T   F +ES  
Sbjct: 489 SQRGLGHIRDSLEIIE---KNQGK-KVDIHRIKDFKHDEKIKQHLRKGHTIGAFYVESPA 544

Query: 616 MKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKE 675
           M+ L+ +L+ D +  ++A  ++ RPG  +SGM+  +I R    E      +   H  L +
Sbjct: 545 MRMLLAKLEVDEYLGLVAASSIIRPGVARSGMMREYILRHRKPEM----RKSRAHPILHD 600

Query: 676 ILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA--KQRAVFQEGAEK 733
           ++  TYGI++YQE V+++A   +G +   AD+LRR M  K     A  K +  F + + +
Sbjct: 601 LMPETYGIMVYQEDVIKVAHYFAGLSFDEADVLRRGMSGKFRSRAAFLKVKESFFKKSME 660

Query: 734 NGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDN 793
            G   ++  +I+  VE FAGY F K HSA++A+ SYQ+L+LK H+P EFM  V+  +   
Sbjct: 661 KGHAPKITSEIWFQVESFAGYSFAKGHSASFAVESYQSLYLKAHFPLEFMVGVIN-NFGG 719

Query: 794 TEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEAR 853
             K    + E +     V  P +N   Y   V     +  G   +K + +     IL+ R
Sbjct: 720 FYKTEFYIRELQGYHADVQLPHLNESDY-LTVIKGTTVYLGFIHLKYLQKDITNTILQNR 778

Query: 854 NKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALD 889
              G F  L DF  RI +       +E+L++   +D
Sbjct: 779 ETEGPFTGLRDFINRIAIS------LEQLLILIRID 808



 Score = 36.2 bits (82), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 7  IHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPII 66
          +++  HS FS   G   V  +V +   +G+ AMALTD      +  F        +  +I
Sbjct: 1  MYVNCHSYFSFRYGTMPVQEMVDQAKKLGVKAMALTDINCTAAVYPFLKATKAANIHGVI 60

Query: 67 GADF 70
          G DF
Sbjct: 61 GIDF 64