Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1428 a.a., DNA-directed DNA polymerase III (polc) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  702 bits (1813), Expect = 0.0
 Identities = 427/1205 (35%), Positives = 650/1205 (53%), Gaps = 85/1205 (7%)

Query: 3    DPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGV 62
            D  F HL +H+ +S++   S++P +V +     MPA+A+TD  N+     F   A +  +
Sbjct: 242  DTPFSHLHVHTQYSILQATSEIPAMVARAKEFNMPAIAMTDHGNMMAAFHFVKAAMDNDI 301

Query: 63   KPIIGADFTL----QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDK 118
            KP++G +F +    Q++   D+  +  LLAKN  GY NL  L S AY +G   + P IDK
Sbjct: 302  KPVVGCEFNICRDHQNKSQKDDGFQAVLLAKNKTGYHNLAKLASFAYTQGFY-YVPRIDK 360

Query: 119  AWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE 178
              LV++   +I  +GG  GEV   +L   + Q E    +++  F + FY+EL R G  +E
Sbjct: 361  ELLVQYKGDIIATTGGLWGEVPFLILNVGETQAEEAFVWWKEQFGEDFYVELNRHGIPEE 420

Query: 179  ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQ 238
            E      L  A++YD+   A N   + T+   +AH+I + + DG  ++ P+R      ++
Sbjct: 421  EKVNEVLLRFAQKYDVKYFAANNTYYNTKNDAKAHDILLCVKDGEKVDKPKRYIGKKGRE 480

Query: 239  ----------YLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNF------- 281
                      Y+++  EM +LFAD+PEA+  + EI ++        E  LP F       
Sbjct: 481  FRYGFPNEEFYIKTPEEMKKLFADLPEAIECTNEIIEKVEPYKLAREVLLPKFNIPEQFQ 540

Query: 282  -----PTGGMAIED-FLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQM 335
                   GG   E+ +L   + EG + R       PE+  + R    ERL  EL +I   
Sbjct: 541  DPQDDEDGGKRGENAYLRHLTYEGAKRRY------PEITEEIR----ERLDFELSIIANT 590

Query: 336  GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPE 395
            G+PGYFLIV +F   +++  + VGPGRGS AGS VAY + IT++DP+ YDLLFERFLNP+
Sbjct: 591  GYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPVAYDLLFERFLNPD 650

Query: 396  RVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGF 455
            RVS+PD D+DF    R +VID+V E YG + V+QIIT+GTMAAK+ IRD  R L  P   
Sbjct: 651  RVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQIITYGTMAAKSAIRDTARALDLPLSD 710

Query: 456  VDRISKLVPP-----------DPGMTLEKAFIAEPALQELYD------ADEEVKELIDKC 498
             DR++KLVP            D G   EK       + + Y+       ++++ + I++ 
Sbjct: 711  ADRLAKLVPDIKLKALFGLANDRGKLAEKLKNNSENIDKAYELINISKGNDDLSKTINQA 770

Query: 499  RILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLG 558
            +ILEG  RN G HA GV+I+P  IT+F P+    + +   TQFD + VE AGL+K DFLG
Sbjct: 771  KILEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDMYCTQFDNSVVENAGLLKMDFLG 830

Query: 559  LRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKE 618
            L+TLT+I  A+ +V  R      P    E  P+DD  ++   Q  +T  +FQ ES GM++
Sbjct: 831  LKTLTLIKDAVRIVKERHGIELDP----ENFPIDDKETYELFQRGETVGIFQYESPGMQK 886

Query: 619  LIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILE 678
             ++ L+P  F D+IA+ AL+RPGPL+   + +FI RKHG E I+Y       + ++E L+
Sbjct: 887  YMRELKPTVFADLIAMNALYRPGPLE--YIPSFIKRKHGLEPIAY-----DLDDMEEYLQ 939

Query: 679  PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDG 738
             TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK  + + K +  F   A + G D 
Sbjct: 940  ETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKLRDVLDKMKPKFVNQAAEKGHDK 999

Query: 739  ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVV 798
                KI+   E FA Y FNKSHS  YA V+YQT +LK HYPAE+MA+V++ +M++  +V 
Sbjct: 1000 AKLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMNDITQVT 1059

Query: 799  GLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGY 858
              ++ECK MG+ VL PD+N     F V+  G I +G+ AIKG G   + +++E R + G 
Sbjct: 1060 FFMEECKRMGIEVLGPDVNESKDGFTVNQEGQIRFGLAAIKGAGGAAVHSVIEERAENGP 1119

Query: 859  FKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMAS--------VDDAVRAAS 910
            +K +FDF  R++L+ VNK+ +E L +AG  D    H               ++ AV+ A 
Sbjct: 1120 YKSIFDFTQRVNLRSVNKKTLESLAMAGGFDCFPDHHRRQYLEAPENDATLIEKAVKYAQ 1179

Query: 911  QHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYL 970
            +  Q     Q  +FG      E      T +  + +  +L  E+E +GLY++GHP+D++ 
Sbjct: 1180 KKAQEAESSQVSLFGG-GSGMEVPMPSITPIEPFSQLQQLNIEKEVVGLYISGHPLDQFK 1238

Query: 971  KELTKYTSCRLNEAAPT---RRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEV 1027
             E   +T+  L+E A T   +    +  AG+V +    TTK G   G +TL+D +G    
Sbjct: 1239 VEFDSFTNTPLSEFANTEALKTKGEIKAAGVVTSFAHRTTKNGNPFGTLTLEDYNGGHTF 1298

Query: 1028 MLYSEALDRYAEWLEKDKILVVSGQVSFDDFN-GGLKMSAREVMDLGSAREKFARGLSIS 1086
             L+ E   +Y E+      L V+G V    +N   L+     +M L   R K  +GL ++
Sbjct: 1299 FLFGEDYIKYKEYFMTGWFLYVTGSVQGKRWNPDELEFKVGNIMLLNEVRGKMVKGLRLN 1358

Query: 1087 ILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTL---GTEWRVTPSDTLLD 1143
            I    +     ER   I   ++       +Y    D + R+ +    T++ + PS  ++ 
Sbjct: 1359 ISLDDLTLDLMERLEAITSKYKG---EAKLYINVTDVKERIAVDLRSTKFLIDPSQDMIK 1415

Query: 1144 ELKQL 1148
             L+ +
Sbjct: 1416 ALEDI 1420