Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1154 a.a., DNA polymerase III subunit alpha from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  790 bits (2041), Expect = 0.0
 Identities = 472/1132 (41%), Positives = 665/1132 (58%), Gaps = 64/1132 (5%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HLR+ S +S+++G  K   + K  A  GMPA+ + D  NL G ++F  TA + GV+PI
Sbjct: 10   FVHLRVRSAYSLLEGAIKAAKVGKLAADSGMPAVGVADRANLFGALEFSQTAKDAGVQPI 69

Query: 66   IGADFTL-----QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            +     +     Q      ++  + LLA++  G+ NL  L S AYL      +P +    
Sbjct: 70   VACALPVFGIGGQINARWAKVPTVVLLAQDTAGWLNLCALSSSAYLDAGEMAEPGVAWEQ 129

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            +V  +EGLI+LSGG  G V     +G + +    +   +  F D FY+EL R G  DE+ 
Sbjct: 130  VVARSEGLILLSGGPDGPVDPLFAQGKKAEGAAALAAMRAAFGDRFYVELQRHGLEDEKR 189

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDG-YTLEDPRRPKNYSPKQY 239
                 ++ A   D+P+VATN+V +      ++H+  + I DG +T ++ RR    + + +
Sbjct: 190  AEPGLVEWAYANDVPLVATNDVYYAKAGQAKSHDALLCIADGAFTGQEDRR--RITGEHW 247

Query: 240  LRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSRE 298
             +  A M E FAD+PEA  N+++IA+RC   V      LP F TG G +  D L  ++RE
Sbjct: 248  FKPAAVMREQFADLPEACDNTIDIARRCAFLVNTHAPILPRFDTGAGRSEADELAHQARE 307

Query: 299  GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358
            GL+ RL  + P     A    EY  RL+ E+ +I QMGFPGYFLIV +FI+W+K + IPV
Sbjct: 308  GLKVRLTEVTP-----AVPEEEYWTRLEWEVGIIQQMGFPGYFLIVSDFIKWAKTHGIPV 362

Query: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 418
            GPGRGSGAGSLVA++L ITDLDPL + LLFERFLNPERVSMPDFD+DFC ++R++VID+V
Sbjct: 363  GPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERREEVIDYV 422

Query: 419  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFI 476
             + YG+D V+QIITFGT+ A+AV+RDVGRVL  P G VDR+ K+VP +P   +TL +A  
Sbjct: 423  QDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPAAPVTLAQAID 482

Query: 477  AEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNF 536
             EP L+E  DA+  VK L++    LEG  RNA  HA G+VI    +T+  P+Y D     
Sbjct: 483  IEPRLKEARDAEPAVKTLLETALELEGLYRNASTHAAGIVIGDRPLTELVPLYQDPRSTI 542

Query: 537  PVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARS 596
            P +QF+   VE AGLVKFDFLGL+TLT++D A G +  R   A K      ++PLDDAR+
Sbjct: 543  PASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERR--GAAKD---WNSLPLDDART 597

Query: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656
            +  +   +T  VFQLES+GM++ +++++    E+I AL++L+RPGP++  M+D +IDRK 
Sbjct: 598  YELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPME--MIDTYIDRKF 655

Query: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716
            GR  + Y      H SLKE+L  TYG+I+YQEQVM+IAQVL+GY+LG AD+LRRAMGKKK
Sbjct: 656  GRAEVDY-----LHPSLKEVLTETYGVIIYQEQVMKIAQVLAGYSLGEADLLRRAMGKKK 710

Query: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776
             EEM  QR  F +GA +  V    +  IFDLV KFAGYGFNKSH+AAYAL+S+QT WLK 
Sbjct: 711  KEEMDFQRLRFVKGAAEKAVPEAQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLKA 770

Query: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNV---DDNGAIVY 833
            + P EF AA M+ D+ NT+K+     + K   + VL PDIN     F+V   DD GA++Y
Sbjct: 771  NQPVEFFAASMSLDLSNTDKLAVFYQDAKRFDVPVLAPDINRSSADFDVAWDDDKGAVLY 830

Query: 834  GIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGP 893
             +GAI+ VG   ++ ++E R  GG F D+FDF  R+D + VNKR +E L  AGA D +  
Sbjct: 831  ALGAIRNVGLEAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFDSIHT 890

Query: 894  HRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGE 953
            +R  ++   D  +          A  Q  +FG   D       +   V  W    RL+ E
Sbjct: 891  NRRQLLEQADVLMAYCQSVAAERASSQVSLFG--GDQAHAARPRLKSVEPWVGPERLDHE 948

Query: 954  RETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRD--QSLTVAGLVIAARVMTTKR-G 1010
               +G YL+GHP+DE    L +     + EA P      ++  +AG+V   +   + R G
Sbjct: 949  LSAVGFYLSGHPLDEMTSALKRKRVTFVAEAIPLAESGHEAFQMAGVVRRKQERASARTG 1008

Query: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVV-------SGQVSF-------- 1055
             +   +T  D +G  E +   E L +  E LE    ++V        G+V F        
Sbjct: 1009 EKFAFVTFSDPTGEFECLFPPEQLRKCREVLEPGASVMVRVRAKSSEGEVRFFGDDASQM 1068

Query: 1056 ----DDFNGGLK--MSAREV-MDLGSAREKFAR------GLSISILQSQIDQ 1094
                DD N GL+  +SAR    +   AR + AR      G  +S++ + +DQ
Sbjct: 1069 DNLLDDANIGLRIHVSARSADAEALKARLERARSGAIGKGGEVSLMIAGLDQ 1120