Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1117 a.a., error-prone DNA polymerase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  306 bits (783), Expect = 8e-87
 Identities = 292/1138 (25%), Positives = 497/1138 (43%), Gaps = 95/1138 (8%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYS---TA 57
            M+ P +  L   S+FS + G S    LV      G   + L D   + G+V+ +S   T 
Sbjct: 1    MTAPAYAELATASNFSFLRGASHPKDLVLTAILRGHSGLGLADRNTVSGVVRAWSALRTI 60

Query: 58   HNCGVKP------------II------------------GADFTLQSEE---FGDELTKL 84
               G+ P            +I                   A F L +     F D    +
Sbjct: 61   REDGLSPPDVVRDGGGPGEVIYVEDPLNDPALSQMVKDRAATFKLATGARLVFNDGTPDI 120

Query: 85   TLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHAEGLIVLSGGKSGEVGRALL 144
                +   G+  LT L++    R  V+ Q  I    L+  +E L+++       +  A L
Sbjct: 121  IAYPETRAGWGRLTRLLTLGNRRA-VKGQCEIGLRDLLAASEDLLLIL------MPDARL 173

Query: 145  KGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVF 204
             G    V++ +           +L  +   + D+   L     ++E+   P++A N V++
Sbjct: 174  DG----VDKVLAQLTDASPGAVWLGAVMGRKGDDRRRLSRLKTLSERSGAPLLAVNNVLY 229

Query: 205  ITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIA 264
                  +  ++   I +G T+ED  R  N + +++L+  AEM  LF D PEAL  +  + 
Sbjct: 230  HDAIQRDLQDVLTCIREGVTIEDAGRRLNANAERWLKPPAEMARLFRDAPEALVETQHVL 289

Query: 265  KRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDER 324
             R    +    Y  P   T           ++ +G  E+L +   +         +    
Sbjct: 290  SRIGFDLGDISYQYPEETTPPD--------ETPQGWLEQLTWRHAEMRYPDGVPHKVKAL 341

Query: 325  LQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEY 384
            L  EL  I + G+  YFL + + ++ + D  I +  GRGS A S V Y L IT +DP E 
Sbjct: 342  LDKELIFIAKAGYAPYFLTIYDIVRVANDKRI-LCQGRGSAANSAVCYVLGITAVDPAES 400

Query: 385  DLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRD 444
            DLLFERFL+ +R   PD DVDF  ++R+++I H+   YGR       T      K+ IRD
Sbjct: 401  DLLFERFLSTDRGEPPDIDVDFEHERREEIIQHIYTRYGRARAGIAATVIRYRPKSAIRD 460

Query: 445  VGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQELYDADEEVKELIDKCRILEGC 504
            VG+ LG       R++       G  + +  + +  L     A+  ++  +     L   
Sbjct: 461  VGKALGLTEDVTARLASSQWGSWGSEIGERHVKQAGLD---PANPMIQRAVKLAMRLLNF 517

Query: 505  TRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTI 564
             R+  +H GG V++   + +  PI   A  +    ++DK+D++   L+K D L L  LT 
Sbjct: 518  PRHLSQHVGGFVLTQDRLDELVPIGNAAMPDRTFIEWDKDDIDALRLMKVDVLALGMLTC 577

Query: 565  IDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQ 624
            I  A  L+    +        +  IP DD   +  L    +  VFQ+ESR    ++ RL+
Sbjct: 578  IRKAFDLI----RAHHGDDWALHTIPRDDPAVYDMLCKGDSIGVFQVESRAQINMLPRLK 633

Query: 625  PDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISY--PDEKWQHESLKEILEPTYG 682
            P    D++  VA+ RPGP+Q  MV  ++ R++G E   Y  P  ++ H+ L+++L+ T G
Sbjct: 634  PRRLYDLVIQVAIVRPGPIQGDMVHPYLRRRNGLEEPEYSKPGPQYPHDELEQVLKKTLG 693

Query: 683  IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAE-KNGVDGELA 741
            + L+QEQ M++A V + +    A+ LR+AMG  + +           G   + G D   A
Sbjct: 694  VPLFQEQAMKVAMVAAEFNEKEANGLRKAMGTFRGDGTLHNYEDRMVGRMIERGYDPTFA 753

Query: 742  MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLV 801
             + FD ++ F  YGF +SH+A++A + Y + W+K HYPA F  A++ +          LV
Sbjct: 754  QRCFDQIKGFGSYGFPESHAASFAQLVYVSSWIKHHYPAAFACALLNSQPMGFYAPAQLV 813

Query: 802  DECKNMGLTVLPPDINSGLYRFNV---DDNGAIVYGIGAIKGVGEGPIEAILEARNKGGY 858
             + +  G+ V P D++   +  ++   D   A+  G+  I+G  E   EA+  AR    +
Sbjct: 814  RDAREHGVEVRPVDVSYSGWNNSLEGSDRTPALRIGLRQIEGFREDWAEALAAAR---AF 870

Query: 859  FKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAF 918
                 +  AR     ++   + KL  A A   LG  R   +     AVR          F
Sbjct: 871  SLSNIETLAR--RAALSSAAMRKLADADAFRSLGLDRREALW----AVRRLPDDAPLPLF 924

Query: 919  GQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHP--VDEYLKELTKY 976
              A       DA E   +   ++P  P    +  + +TL L L  HP  +   + E    
Sbjct: 925  AAA-------DARELGAEPDARLPVMPLGEHVAADYQTLRLSLKAHPMAILRPIFEAEGL 977

Query: 977  TSCRLNEAAPTRRDQSLT-VAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALD 1035
             +C   +A   RR  +L  VAG+V+  +     +G  I  +TL+D +G + V+L++   +
Sbjct: 978  LNCAQTDA---RRGGALVRVAGVVLVRQ--RPGKGNAI-FVTLEDETGIINVVLWARMFE 1031

Query: 1036 RYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFARGLSISILQSQID 1093
            ++   +   +++ V G V      G + + AR V+D  S   + ++    ++  ++ D
Sbjct: 1032 QFRREVMAARLMAVEGVVEKSP-EGVVHLVARRVIDRSSELSRLSQEHDTAVQLARAD 1088