Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1048 a.a., Error-prone DNA polymerase from Azospirillum sp. SherDot2

 Score =  388 bits (996), Expect = e-111
 Identities = 299/1076 (27%), Positives = 518/1076 (48%), Gaps = 67/1076 (6%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++  L++ ++FS ++G S    L    AA+G+ A+ +TD  +L G+V+ +  A   G++P
Sbjct: 3    RYAELQLATNFSFLEGASHPDELAMTAAALGLAAVGVTDRNSLAGVVQMHVAAKKVGIRP 62

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
            +IG    L   +       L     +   Y  L+ L++   +R   + +  I +  ++ H
Sbjct: 63   LIGCRLDLTDAD------SLLAYPTDRAAYARLSRLLTLGKMRAP-KGECFIARTDVLAH 115

Query: 125  AEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFA-DHFYLELIRTGRADEESYLH 183
            AEG++ L  G              +   R +  +++  A    YL      + D+   L 
Sbjct: 116  AEGMLFLLLGPDRR---------DETFLRELRAWRSGLARGQLYLAASHRYQGDDARRLR 166

Query: 184  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243
            +   +AE   +P+VATN+V++      E  ++   I    T+++     + + +++L+  
Sbjct: 167  WLAGLAEAEGVPLVATNDVLYHGAGRRELADVMTCIRHHTTIDEAGWRLSANAERHLKPA 226

Query: 244  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGLEER 303
             EM  LF D P+A+A ++EIA+ C  ++    Y  P+    G   ++ LV  + +G  +R
Sbjct: 227  VEMMRLFRDHPDAVARTLEIAEACRFSLEELRYDYPDEVAEGRDPQETLVALTWDGAAKR 286

Query: 304  LEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRG 363
                +P             E ++ EL +I +  F  YFL V + ++++++ DI +  GRG
Sbjct: 287  ----YPSDRFPGGIPDAVRETVERELALIAEQRFAPYFLTVHDIVRFAREQDI-LCQGRG 341

Query: 364  SGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYG 423
            S A S V Y L IT +DP E DLLFERF++  R   PD DVDF  ++R++VI ++   YG
Sbjct: 342  SAANSAVCYCLGITSVDPTEVDLLFERFISSARGEPPDIDVDFEHERREEVIQYIYGKYG 401

Query: 424  RDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQE 483
            R       T     A++ +R+VG+ +G     V R++  +    G  +++    + A + 
Sbjct: 402  RARAGLTATVIRYRARSALREVGKAMGLSADLVARLTGSIWGWGGQGVDE----DRARKL 457

Query: 484  LYDADE-EVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFD 542
              D D+  +K  ++    L G  R+  +H GG VI+   ++D  P+   A  +    ++D
Sbjct: 458  GVDPDDPRLKRTLELATELMGFPRHLSQHVGGFVITRGPLSDLCPVANAAMKDRSTIEWD 517

Query: 543  KNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQD 602
            K+D++  G++K D L L  LT I  A  L+    ++       +  +P DD   +  L  
Sbjct: 518  KDDIDALGILKVDVLALGMLTCIHRAFDLI----EQVHGQRWALATLPQDDPAVYDMLGR 573

Query: 603  AKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAIS 662
            A +  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R+ G E I+
Sbjct: 574  ADSLGVFQVESRAQMSMLPRLRPKKFYDLVIEVAIVRPGPIQGGMVHPYLRRRSGAEDIT 633

Query: 663  YPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMA 721
            YP        L+ +L  T G+ L+QEQ M++A V +G+T   AD LRRAM   +K  ++ 
Sbjct: 634  YP-----MPVLEPVLSRTLGVPLFQEQAMKVAMVGAGFTAEEADQLRRAMAAFRKSGQVE 688

Query: 722  KQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE 781
            +    F  G    G D   A + F  +E F  YGF +SH+A++AL+ Y + W+K H+PA 
Sbjct: 689  RFHDKFIAGMTAKGCDPAFAERCFKQIEGFGEYGFPESHAASFALLVYVSAWIKHHHPAI 748

Query: 782  FMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGV 841
            F AA++ +          +V + +  G+TVLPPD+N   +   V+ + ++  G+  IKG 
Sbjct: 749  FAAALLNSQPMGFYAPAQIVRDAREHGVTVLPPDVNLSGWDCAVEGSSSLRLGLRLIKGF 808

Query: 842  GEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMAS 901
                 ++++ +R  GGY  D +D   R    ++    +EKL  A A   +G  R A +  
Sbjct: 809  TPQHADSVVLSR-AGGY-SDPYDLWRR---ARLPVPALEKLAKADAFRSVGLDRRAALW- 862

Query: 902  VDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGER-----ET 956
               AVRA              +F  L   P        + PE P      GE       +
Sbjct: 863  ---AVRALGDQ-------PLPLFARLDGPP---YNPMAEEPEAPLPAMALGEHVVMDYGS 909

Query: 957  LGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLM 1016
            L L L  HP+      L   T       A TR  + LT AGLV+  +   +  G  +  +
Sbjct: 910  LSLSLKAHPLSLLRDGLPGITPA--ERLAQTRDGRRLTTAGLVLVRQRPGSAEG--VVFI 965

Query: 1017 TLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072
            TL+D +G   +++  +A + +   +   +++  +G+V   +  G + +    ++DL
Sbjct: 966  TLEDETGIANLVVMPDAFETFRRPIMTARLMAATGRV--QNHEGVVHLRVESLIDL 1019