Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1154 a.a., DNA polymerase III subunit alpha from Alteromonas macleodii MIT1002

 Score = 1673 bits (4332), Expect = 0.0
 Identities = 819/1159 (70%), Positives = 964/1159 (83%), Gaps = 5/1159 (0%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS P FIHLR+HSDFSM+DGL+KV P++ KVAA+GMPA+A+TD  N+CGLVKFYS AHN 
Sbjct: 1    MSSP-FIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNL 59

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPIIG DF + +E FGDE  +LTL+A NN GYKN+T+LISKAYLRGH+ H+ VID+ W
Sbjct: 60   GIKPIIGTDFWVTNEVFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLSHRAVIDQEW 119

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L EH+EG+I LSG + G+VG  L+K N + ++  +EFYQTHF D FYLELIRTGR  EE 
Sbjct: 120  LAEHSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELIRTGRQGEED 179

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            YLH A+++AEQ  LPVVATNEV FI  E F+AHEIRV IHDGYTL+D RRPK YS +QYL
Sbjct: 180  YLHLAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRPKRYSDQQYL 239

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            R+  EM ELF+DIPEA+ N+VEIAKRCNVTVRL EYFLP FPTGGM  EDFLV  S EGL
Sbjct: 240  RTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTGGMTTEDFLVKVSEEGL 299

Query: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
            EERLEFLFPD EVR  +RPEYD+RL++EL+VINQMGFPGYFLIVMEFIQWSKDN IPVGP
Sbjct: 300  EERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 359

Query: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD+RD+VIDHVAE
Sbjct: 360  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 419

Query: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480
            +YGR AVSQIITFGTMAAKAV+RDVGRVLGHP+GFVDRISKL+PPDPGMTLEKAF AEP 
Sbjct: 420  LYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFKAEPQ 479

Query: 481  LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
            L E+Y++DEEVK+LID  RILEG TRNAGKHAGGVVI+PT ITDF+P+YCD EG  PVTQ
Sbjct: 480  LPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGKNPVTQ 539

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            FDKNDVETAGLVKFDFLGLRTLTII WA+ ++    K+     V I AIPL+D +SFR L
Sbjct: 540  FDKNDVETAGLVKFDFLGLRTLTIIQWAIDMI----KEGKNVDVDISAIPLEDPKSFRTL 595

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
            Q+A+TTAVFQLESRGMKELIKRL+PDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 
Sbjct: 596  QNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREE 655

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720
            ISYPD ++QHE LKEILEPTYGIILYQEQVMQIAQ ++GY+LGGAD+LRRAMGKKKPEEM
Sbjct: 656  ISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEM 715

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
            AKQR  F EGA+ N +D +LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK HYPA
Sbjct: 716  AKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHYPA 775

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
            EFMAAVM+ADMDNT+K+V LVDEC+ MG+ +LPPD+N+G Y+F VD  G IVYGIGAIKG
Sbjct: 776  EFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSEGRIVYGIGAIKG 835

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900
            VGEGPIEAI+EAR   G FKDLFDFCA+ID+K+VNKRV+EKL+LAGA+D LGPHRA++MA
Sbjct: 836  VGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMDNLGPHRASLMA 895

Query: 901  SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960
            S+ +A+ AA QH +AE+FGQ+DMFG+LT  PE+V+Q +  VPEWPEKV LEGE++TLGLY
Sbjct: 896  SLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQAFADVPEWPEKVWLEGEKDTLGLY 955

Query: 961  LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD 1020
            LTGHP+++Y +EL  YT  RL +  PT +DQ  +  GLV+  RVMT KRG R  ++TLDD
Sbjct: 956  LTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKRGRRWAIVTLDD 1015

Query: 1021 RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA 1080
            +S R++V  + +  +++   LE D+IL++ GQVSFDDF+GG  ++AR+VMD+  AREK A
Sbjct: 1016 KSARIDVRFFPDMYEQFESVLETDRILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNA 1075

Query: 1081 RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT 1140
            R L+++I    ++ +   +   IL+    G+ PV +    PDA   L  G  W VTP D 
Sbjct: 1076 RALALNIDTQLLEPKKMSQMQSILQAFNGGSCPVQLAVTHPDAEVILACGARWYVTPEDQ 1135

Query: 1141 LLDELKQLLGHDQVELEFN 1159
            LL +LKQ LG   V + ++
Sbjct: 1136 LLHDLKQCLGDKAVSILYH 1154