Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  332 bits (850), Expect = 1e-94
 Identities = 286/1074 (26%), Positives = 492/1074 (45%), Gaps = 97/1074 (9%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            +  L++ + FS + G S    L +   A+G+ A+ + D  +L G+V+    +   G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRLV 62

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
            IG    L      D ++ L +   +   Y  LT LI+    RG         K   + H 
Sbjct: 63   IGCRLDL-----ADGMSVL-VYPTDRAAYSRLTRLITLGKSRG--------GKNNCLLHW 108

Query: 126  EGLIVLSGGKSGEVGRAL---LKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYL 182
            + ++  + G  G +   L   L G Q  + +  E     F D  Y+ L    R +++  L
Sbjct: 109  DDVVAYTDGMIGILVPDLPDDLCGIQ--LRKMAEL----FGDRAYVSLCLRRRQNDQLRL 162

Query: 183  HFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRS 242
            H   ++A ++ +  V TN+V+F      +  +I   I    T+++    +     +YL+ 
Sbjct: 163  HEISNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKP 222

Query: 243  EAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLV--MKSREGL 300
              EM  LF    +ALA ++EI +RC  ++    Y  P         E+ +V    ++  L
Sbjct: 223  PEEMERLFPRYRQALARTMEIVRRCTFSLEELTYQYP---------EEAIVPGKDAQASL 273

Query: 301  EERLEFLFPD--PEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358
            E  +    PD  PE      P+  + ++ ELD+I  M +  YFL V   +++++   I +
Sbjct: 274  EHYVWQCVPDRYPEGLP---PDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYARSQGI-L 329

Query: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 418
              GRGS A S V Y L IT +DP   DLLFERF++ ER   PD DVDF  ++R++VI  +
Sbjct: 330  CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWI 389

Query: 419  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAE 478
               Y R+  +   T     A+  IRDVG+ LG P   +  +S       GM      + +
Sbjct: 390  YRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSS------GMWSWSEEVCD 443

Query: 479  PALQE--LYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNF 536
              ++E  L   D  +   +   + L G  R+ G+H GG V++   + D  PI      + 
Sbjct: 444  RNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDR 503

Query: 537  PVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARS 596
             + ++DK+DVE    +K D L L  LT +  A  L+     +     + +  I  +D+ +
Sbjct: 504  QIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDR----DLDLSKIEQEDSVT 559

Query: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656
            +  ++ A T   FQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ R+ 
Sbjct: 560  YAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRRE 619

Query: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-K 715
            G+EA+ YP  +     L+ +L  T G+ L+QE  M++A V +G+T G AD LR++M   K
Sbjct: 620  GKEAVEYPTPE-----LEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 716  KPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775
                +++ +     G  +NG   E A K F  +E F  YGF +SH+A++AL++Y + ++K
Sbjct: 675  FTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIK 734

Query: 776  THYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSG-----LYRFNVDDNGA 830
             HYP  F AA++ +          +V + +  G+ V P  IN       L R    D  A
Sbjct: 735  CHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHA 794

Query: 831  IVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGA-LD 889
            +  G   +KG+       ++ AR     F  + D   R     V    + +L  A A L 
Sbjct: 795  VRLGFRQVKGLAVADAARVVAARMNNA-FVSVDDMWRR---SGVPSEALVQLAKADAFLP 850

Query: 890  RLGPHRA----AMMASVDDAVR--AASQHHQAEAFGQADMFGV----LTDAPEEVEQKYT 939
             L   R     A+ A  D+ +   AA+   +  A  +    GV    +TD    +E    
Sbjct: 851  SLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQMTDGHNVIE---- 906

Query: 940  QVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLV 999
                         +    GL L  HP+    K+L+        EA  +R  + +  AGLV
Sbjct: 907  -------------DYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLV 953

Query: 1000 IAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053
            +  +   + +G  +  +T++D +G   ++++    ++    +    ++ ++G++
Sbjct: 954  LVRQKPGSAKG--VMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRI 1005