Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  342 bits (876), Expect = 1e-97
 Identities = 279/1064 (26%), Positives = 477/1064 (44%), Gaps = 77/1064 (7%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            +  L++ + FS + G S    L +   A+G+ A+ + D  +L G+V+    +    ++ +
Sbjct: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRLV 62

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
            +G    L           L +   +   Y  LT LI+    RG         K   + H 
Sbjct: 63   VGCRLDLTDG------MSLLVYPTDRAAYSRLTRLITLGKSRG--------GKNNCILHW 108

Query: 126  EGLIVLSGGKSGEVGRALLKGN-QQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF 184
            + +I  S G  G +   L       Q+ R  E     F D  Y+ L    R +++  LH 
Sbjct: 109  DDVIAYSRGMIGVLVPDLPDATCAAQLRRIAEA----FGDRAYVSLCLRRRQNDQMRLHE 164

Query: 185  ALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEA 244
              ++A ++ +  V TN+V+F      +  +I   I    T++D    +     +YL+   
Sbjct: 165  ISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKPPE 224

Query: 245  EMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLV--MKSREGLEE 302
            EM  LF+   EALA ++EI +RC  ++    Y  P         E+ +V    ++  LE 
Sbjct: 225  EMERLFSRYSEALARTLEIVRRCKFSLEELTYQYP---------EEAIVPGKDAQASLEH 275

Query: 303  RLEFLFPDPEVRAKRRPE-----YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 357
             +    PD      R PE       + ++ ELD+I  M +  YFL V   +++++   I 
Sbjct: 276  YVWECAPD------RYPEGLPQDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFARSQGI- 328

Query: 358  VGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 417
            +  GRGS A S V Y L IT +DP   DLLFERF++ ER   PD DVDF  ++R++VI  
Sbjct: 329  LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQW 388

Query: 418  VAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIA 477
            + + Y +D  +   T     AK  IRDVG+ LG P   +  +S       GM      + 
Sbjct: 389  IYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSS------GMWSWSEEVP 442

Query: 478  EPALQE--LYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGN 535
            +  ++E  L   D  +   +   + L G  R+ G+H GG V++   + D  PI      +
Sbjct: 443  DRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKD 502

Query: 536  FPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDAR 595
              + ++DK+DVE    +K D L L  LT +  A  L+    ++     + +  I  +DA 
Sbjct: 503  RQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLI----REHKGQQLDLSNIEQEDAA 558

Query: 596  SFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 655
            ++  ++ A T   FQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ R+
Sbjct: 559  TYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRR 618

Query: 656  HGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK- 714
             G+E + YP  +     L+ +L  T G+ L+QE  M++A V +G+T G AD LR++M   
Sbjct: 619  EGKEPVEYPTPE-----LEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATF 673

Query: 715  KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774
            K    +++ +     G  KNG   E A K F  +E F  YGF +SH+A++AL++Y + ++
Sbjct: 674  KFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYI 733

Query: 775  KTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSG-----LYRFNVDDNG 829
            K HYP  F AA++ +          +V +    G+ V P  +N       L R    D  
Sbjct: 734  KCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDRH 793

Query: 830  AIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALD 889
            A+  G   +KG+       I+ AR           F +  D+ + +    E L+     D
Sbjct: 794  AVRLGFRQVKGLAVADAARIVAARMNN-------PFASVDDMWRRSSVPTEALVQLAEAD 846

Query: 890  RLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVR 949
               P           A++A            A+         +E E    Q+ +    + 
Sbjct: 847  AFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMTDGHNVIE 906

Query: 950  LEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKR 1009
               +    GL L  HPV    ++L+        EA   R  + +  AGLV+  +   + +
Sbjct: 907  ---DYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPGSAK 963

Query: 1010 GTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053
            G  +  +T++D +G   ++++    ++    +    ++ ++G++
Sbjct: 964  G--VMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRI 1005