Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1091 a.a., DNA polymerase III subunit alpha from Agrobacterium fabrum C58

 Score =  355 bits (910), Expect = e-101
 Identities = 285/1052 (27%), Positives = 482/1052 (45%), Gaps = 69/1052 (6%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS P++  L++ + FS + G S    L ++   +G+ A+ + D  +L  + + Y  A+N 
Sbjct: 1    MSAPRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGVVDRNSLAAIPRAYEAANNH 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            GV+ +IG    L      D+L+ L +   +   Y  L  L+S    RG    +     +W
Sbjct: 61   GVRLVIGCRLDLD-----DDLSVL-VYPMDRAAYGRLCRLLSVGKKRGG---KGKCRLSW 111

Query: 121  --LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE 178
              LV + EGLIV+      +   AL           +   +  FAD  Y+ L    R ++
Sbjct: 112  DDLVAYGEGLIVVLLADLADDLCALR----------LRRLKAAFADRAYMALSLRRRPND 161

Query: 179  ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQ 238
            +  L     +A+   +P V TN+V+F   E     ++   I    T+++    +     +
Sbjct: 162  QMRLFELSGMAQAAGVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGFRRERHADR 221

Query: 239  YLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSR 297
            Y++   EM  LFA  PEAL+ S+EIAKRC  +++   Y  P   +  G+  +  L     
Sbjct: 222  YMKPPEEMHRLFARYPEALSRSLEIAKRCKFSLKELVYQYPEERSLPGLTAQQALEKMVW 281

Query: 298  EGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 357
            E +  R     P+         + ++ L  ELDV+ ++ +  YFL V   +++++  DI 
Sbjct: 282  EAVPGRYPNGLPE---------KVEKALHHELDVVGRLQYASYFLTVNAIVRYARSKDI- 331

Query: 358  VGPGRGSGAGSLVAYALKITDLDPLEY-DLLFERFLNPERVSMPDFDVDFCMDKRDQVID 416
            +  GRGS A S++ + L IT +DP  + +L+FERF++  R   PD DVDF   +R++VI 
Sbjct: 332  LCQGRGSAANSVICFVLGITAIDPALFSNLVFERFVSENRGEPPDIDVDFEHQRREEVIQ 391

Query: 417  HVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFI 476
             V + YGRD  +          +  +RDVG+VLG P    + ++KL+        E    
Sbjct: 392  WVYDTYGRDKAALCSVVTRYRGRGALRDVGKVLGLP----EDLTKLLSSQVWRWSEGVGE 447

Query: 477  AEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNF 536
             +     L   D  +K   +    L G  R+  +H GG V+S   + +  PI   A  + 
Sbjct: 448  KQVKELNLNMEDRRLKLAFELANQLVGTPRHHSQHPGGFVLSHDRLDELVPIEPAAMNDR 507

Query: 537  PVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARS 596
             + ++DK+D++    +K D L L  L+ +     L+  R  +       + A+P DD  +
Sbjct: 508  QIIEWDKDDIDIVKFMKMDCLALGMLSCMKRGFDLLEARTGEK----YDLAAMPPDDPAT 563

Query: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656
            F  +Q A T   FQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ R+ 
Sbjct: 564  FAMIQKADTLGTFQIESRAQMSMLPRLKPAKFYDLVIQVAIVRPGPIQGDMVHPYLRRRQ 623

Query: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-K 715
            G+E + Y     +   L+ IL+ T G+ L+QEQ M+IA   + +T   AD LRRAM   K
Sbjct: 624  GKEPVLY-----EKPQLENILKKTLGVPLFQEQAMRIAMDCADFTADEADQLRRAMATFK 678

Query: 716  KPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775
                ++K +     G   NG D E A +IF  +E F  YGF +SH+A++AL++Y + WLK
Sbjct: 679  NVGTISKFKEKLVTGMVANGYDKEFAERIFKQLEGFGSYGFPESHAASFALIAYASSWLK 738

Query: 776  THYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNG------ 829
             H+P  F  A++ +          +V + ++ G+ V P  +N+  +   ++  G      
Sbjct: 739  CHHPDIFCTAILNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCTLEPTGKKNDKG 798

Query: 830  ----AIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILA 885
                A+  G+  +KG+       I+ AR           F +  DL +        L+  
Sbjct: 799  EERFAVRLGLRMVKGLSNDHAADIVAARQDR-------PFASVDDLWRRAGVPAAALVCL 851

Query: 886  GALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWP 945
               D   P           A++A            A     + +  +E       + +  
Sbjct: 852  AEADAFLPSLRLARREALWAIKALRDEPLPLFAAAAIRENAVIEELQEPSVALRPMTDGG 911

Query: 946  EKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVM 1005
            E V+  G    +GL L  HP+    ++L++       EA   R    L  AGLV+  +  
Sbjct: 912  EVVQDYGH---VGLTLREHPMTFLRRDLSRRRIVTCAEAVRVRDGTWLETAGLVLVRQRP 968

Query: 1006 TTKRGTRIGLMTLDDRSGRMEVMLYSEALDRY 1037
             + +G  +  MTL+D +G    +L+ +  ++Y
Sbjct: 969  GSAKG--VIFMTLEDETGIANAVLWVKTFEKY 998