Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  814 bits (2103), Expect = 0.0
 Identities = 478/1097 (43%), Positives = 666/1097 (60%), Gaps = 48/1097 (4%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            +  P F+HLR+HS +S+++G   +  ++ K    G PA+A+TD  NL   ++F   A + 
Sbjct: 15   LKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDE 74

Query: 61   GVKPIIGADFTLQSEEFGDE----------LTKLTLLAKNNVGYKNLTLLISKAYLRGHV 110
            G++PIIG   ++  ++  ++          L  + LLA N  GY+ L  L+S+AYL G  
Sbjct: 75   GLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEG 134

Query: 111  -QHQPVIDKAWLVEHAE-GLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168
              H   I +AWL E +  GLI L+G   G V  AL +G+  Q +  +   ++ F D  Y+
Sbjct: 135  GSHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYI 194

Query: 169  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228
            EL R    D  S+    + +A ++D+P+VATNE  F ++  +EAH+  +A+     + D 
Sbjct: 195  ELQRQSGYDR-SHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDD 253

Query: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM-- 286
             R +  +P  YL+S  EM  LFAD+PEAL N+VEIA RC+  ++     LP F TG    
Sbjct: 254  SRFR-LTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRF-TGASDD 311

Query: 287  ------AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGY 340
                  A  + L  ++ EGL++RL  L   P    +   +Y ERL  EL VI++M FPGY
Sbjct: 312  PEAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQ---DYRERLDFELGVISRMKFPGY 368

Query: 341  FLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMP 400
            FLIV +FI+W+K  DIPVGPGRGSGAGSLVAYAL ITD+DPL + LLFERFLNPERVSMP
Sbjct: 369  FLIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMP 428

Query: 401  DFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRIS 460
            DFD+DFC D+R++VI +V   YGR+ V+QIITFG++ A+A +RDVGRVL  P+G VD+I 
Sbjct: 429  DFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKIC 488

Query: 461  KLVPPDPG--MTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVIS 518
            KLVP +P     L KA   EP LQE  D +  V  L+D  + +EG  R+A  HA G+VI 
Sbjct: 489  KLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIG 548

Query: 519  PTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKK 578
               ++   P+Y D   + PVTQF+   VE+AGLVKFDFLGL+TLT++  A+  V  R  K
Sbjct: 549  DRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIK 608

Query: 579  AGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALF 638
                 V + AIPL+DA+++  L   +T  VFQ+ES GM++ +  ++PDC EDIIALVAL+
Sbjct: 609  -----VDLAAIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALY 663

Query: 639  RPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLS 698
            RPGP+++  V N   RKHG E +     +  H ++  +L+ T G+I+YQEQVMQIAQVLS
Sbjct: 664  RPGPMENIPVYN--ARKHGEEEL-----ESIHPTIDHLLKETQGVIVYQEQVMQIAQVLS 716

Query: 699  GYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNK 758
            GY+LG AD+LRRAMGKK  EEM +QR  F +GA KNGV    A  IFDL+ KFA YGFNK
Sbjct: 717  GYSLGEADLLRRAMGKKIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNK 776

Query: 759  SHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINS 818
            SH+AAYA+VSYQT ++K HYP EF+AA MT DM NTEK+     +   +G+ V+ P + +
Sbjct: 777  SHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQT 836

Query: 819  GLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRV 878
               +F   +N  I Y + AIKGVGEG +E I++ R +   F  L DFC RID K++N+RV
Sbjct: 837  SFRQFETGEN-RIYYSLAAIKGVGEGAVEHIVQVRGEKP-FTSLEDFCLRIDPKQINRRV 894

Query: 879  IEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGV-LTDAPEEVEQK 937
            +E LI AGA D  G  RA ++  +D  +  A         GQ+DMFG      PE++   
Sbjct: 895  LESLINAGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILP 954

Query: 938  YTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTV-- 995
              Q   W    +L  E + LG YLT HP+D Y   L K       + +   +  + TV  
Sbjct: 955  AFQ--SWLPSEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGR 1012

Query: 996  -AGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVS 1054
             AG V   +   T+ G ++G++T  D SG+ E +L+SE L ++ + LE  K LV++ Q  
Sbjct: 1013 LAGTVTGKQERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVINVQAE 1072

Query: 1055 FDDFNGGLKMSAREVMD 1071
                  GL++   + ++
Sbjct: 1073 ERPEGIGLRIQTAQSLE 1089