Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., lytic transglycosylase from Pseudomonas simiae WCS417

 Score =  287 bits (735), Expect = 5e-82
 Identities = 173/476 (36%), Positives = 255/476 (53%), Gaps = 60/476 (12%)

Query: 13  LVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKRKPQT-TATLPAGETESVEEERVALTPQ 71
           L GCQS      +    Q+   P  + T K K+KP    +  PA              P+
Sbjct: 29  LAGCQS------SNFTAQSTVQPKPNLTAKIKQKPVIWLSDKPA--------------PE 68

Query: 72  EQDDVWQRIAMQFKL--GIPKDPSVDAQREWFLKNPGHLQAIASRAEPFLYLITEKVEQR 129
              DVW+R+   F+L  G+  +P ++ QR WF  NP  L+    R   +++ I E++E+R
Sbjct: 69  VPQDVWERMRRGFQLQDGVGVNPRIEQQRLWFASNPSFLENAGERGSLYIHYIVERLEER 128

Query: 130 GLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRRDVAAATDA 189
            +PLEL LLP++ES+++P AYS   A GLWQFI STG+ + L+Q   YDGRRD+ A+T A
Sbjct: 129 NMPLELALLPVIESAYNPMAYSRSDAVGLWQFIPSTGRYFNLRQTRAYDGRRDITASTTA 188

Query: 190 ALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLDLPKETSGYVP 249
           ALDYLT L+  F+GDW  A+AAYN+GEG V+RAI+ N+K G P D+++L LP+ET  YVP
Sbjct: 189 ALDYLTRLHDMFNGDWLLALAAYNAGEGTVSRAIERNEKLGLPTDYWNLPLPQETKDYVP 248

Query: 250 KLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKELQSFNPAY 309
           K +AL+ V+   E YG+++  I N P    V+ K+ +DL+  A  A +   EL   NPA 
Sbjct: 249 KFLALSQVVLAPEAYGVNLNPIANTPYFEVVEVKQSMDLSRVAALAEIDEDELFQLNPAL 308

Query: 310 NQWATAPNGPHQLLIPVEKVERFNLAMEENRGKGIKVVR--------------------Y 349
            Q  T  +GP  LL+P  K +     +   + + +  +R                    Y
Sbjct: 309 KQ-RTTLDGPQHLLVPSSKAQLLTSTLSTMKPEELLAMRPKKQVFDEVETARVAGRTRNY 367

Query: 350 KVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNRLA 409
           KV+SGD L+ IA         ++  N++    ++VG  L +  + K           R+A
Sbjct: 368 KVRSGDNLTLIAKANKVDVHDLQRWNKLNGQALKVGQTLVMQDTRK-----------RVA 416

Query: 410 KTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVI 465
           K  S    QY+    V  G+SL+ +AK++NV  Q L +WN    + AL+ GQ LV+
Sbjct: 417 KADSKKPVQYK----VKKGDSLYIVAKRFNVEMQHLKRWNPRTGQ-ALKPGQMLVV 467



 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 451 MAPKDALRKGQKLVIWKDSKPTSGVIRTVTYKVRSGDTLSGIANKFKVKTADIVKWNDLN 510
           M P++ L    K  ++ + +      RT  YKVRSGD L+ IA   KV   D+ +WN LN
Sbjct: 337 MKPEELLAMRPKKQVFDEVETARVAGRTRNYKVRSGDNLTLIAKANKVDVHDLQRWNKLN 396

Query: 511 STQYLKAGQQL 521
             Q LK GQ L
Sbjct: 397 G-QALKVGQTL 406



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 461 QKLVIWKDSKPTSGVIRTVTYKVRSGDTL-SGIANKFKVKTADIVKWNDLNSTQYLKAGQ 519
           QK VIW   KP   V + V  ++R G  L  G+    +++   +  W   N +    AG+
Sbjct: 55  QKPVIWLSDKPAPEVPQDVWERMRRGFQLQDGVGVNPRIEQQRL--WFASNPSFLENAGE 112

Query: 520 QLKLYV 525
           +  LY+
Sbjct: 113 RGSLYI 118