Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Membrane-bound lytic murein transglycosylase D from Variovorax sp. SCN45

 Score =  241 bits (615), Expect = 5e-68
 Identities = 150/470 (31%), Positives = 248/470 (52%), Gaps = 18/470 (3%)

Query: 10  ALLLVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKRKP--QTTATLPAGETESVEEERVA 67
           +L+L GC       T  S   + + P   AT      P     A  P   +++  +  V 
Sbjct: 12  SLVLAGCAG-----TNNSSAPSSSSPNAGATAGGSASPVYPRDALSPLATSQAHSQSVVT 66

Query: 68  LTPQEQDDVWQRIAMQFKLGIPKDPSVDAQREWFLKNPGHLQAIASRAEPFLYLITEKVE 127
           L P    D+W RI   FK+    +  V  + +W+   P ++Q +  R+  +++ I E++E
Sbjct: 67  LAPPA--DMWDRIRRGFKMPNLDNDLVRDREQWYASRPDYIQRMTERSNKYIFHIVEELE 124

Query: 128 QRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRRDVAAAT 187
           +R +P EL LLP +ES+F+P A S   AAG+WQF+ +TG  + LKQN + D RRDV A+T
Sbjct: 125 RRNMPTELALLPYIESAFNPQAISSARAAGMWQFMPATGTDFDLKQNIFRDDRRDVVAST 184

Query: 188 DAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLDLPKETSGY 247
            AALDYL  L   F GDW  A+AAYN GEG V+RAI  N++ G P  +  L +P ET  Y
Sbjct: 185 RAALDYLQKLYGMF-GDWQLALAAYNWGEGSVSRAIAKNQRLGLPTTYSDLTMPAETRMY 243

Query: 248 VPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKELQSFNP 307
           VPKL A+ +++AN + +   +P I N P   TV     LD+ +AA+ A + +++ ++ NP
Sbjct: 244 VPKLQAVKNIVANPQAFNTELPLIANHPYFQTVTLTRDLDVELAAKLADVRLEDFRALNP 303

Query: 308 AYNQWATAPNGPHQLLIPVEKVERFNLAMEE-NRGKGIKVVRYKVKSGDTLSTIADKYNT 366
           A ++      G  Q+L+P +    F    +  ++G+      + V +  T++  A +   
Sbjct: 304 AAHKPVLIAAGTPQILLPWDNAAVFQRNFDAYSQGQYASWTAWVVPNTMTVADAAQRSGM 363

Query: 367 TAKVIKEANQIASNQ-IRVGSYLFVP--TSVKDEKAYALSVSNRLA-KTQSVPRGQYQLT 422
           +   ++  N +     I+ GS L VP    VK++ A  ++    L+ + + V R   + T
Sbjct: 364 SEADLRAINNVPPRMLIKAGSTLLVPRGARVKEDVAAVVADDGHLSFQPEIVTR---RTT 420

Query: 423 HTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKDSKPT 472
                 +S+ TIA++YN+   ++A+WN + P  A ++G  +V++   + T
Sbjct: 421 VKAGRADSVATIARRYNLKPNNVAEWNDVKPNHAFKRGYSVVVYLPIRAT 470



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 439 NVPYQSLAKWNG--MAPKDALRKGQKLVIWKDSKPTSG----VIRTVTYKVRSGDTLSGI 492
           NVP + L K     + P+ A  K     +  D    S     V R  T K    D+++ I
Sbjct: 373 NVPPRMLIKAGSTLLVPRGARVKEDVAAVVADDGHLSFQPEIVTRRTTVKAGRADSVATI 432

Query: 493 ANKFKVKTADIVKWNDLNSTQYLKAGQQLKLYVDV 527
           A ++ +K  ++ +WND+      K G  + +Y+ +
Sbjct: 433 ARRYNLKPNNVAEWNDVKPNHAFKRGYSVVVYLPI 467