Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., Membrane-bound lytic murein transglycosylase D from Pseudomonas putida KT2440

 Score =  298 bits (762), Expect = 4e-85
 Identities = 175/483 (36%), Positives = 266/483 (55%), Gaps = 59/483 (12%)

Query: 9   LALLLVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKRKPQTTATLPAGETESVEEERVAL 68
           LA  LVGCQS + +D + S    V      A +K K  P                  + +
Sbjct: 25  LAATLVGCQSTRQLDESDS----VRAHNYQARIKHKPSP------------------LLV 62

Query: 69  TPQEQ--DDVWQRIAMQFKL--GIPKDPSVDAQREWFLKNPGHLQAIASRAEPFLYLITE 124
            P EQ   DVW+R+   F L   I  +P ++ QR WF  NP  +++   R   +L+ I E
Sbjct: 63  KPAEQAPQDVWERMRQGFALQDSIDVNPRIEQQRLWFASNPTFIESAGERGSLYLHYIVE 122

Query: 125 KVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRRDVA 184
           ++E+R +PLEL LLP +ES+++P AYS  SAAG+WQF+ +TG+ + L+Q  +YDGRRDV 
Sbjct: 123 RLEERDMPLELALLPAIESAYNPMAYSRASAAGMWQFMPATGRHFNLRQTNFYDGRRDVT 182

Query: 185 AATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLDLPKET 244
           A+T+AALDYLT L+  F+GDW  A+AAYN+GEG V+RAI+ N++ G P D+++L LP+ET
Sbjct: 183 ASTNAALDYLTRLHDMFNGDWLLALAAYNAGEGTVSRAIERNERLGLPTDYWNLPLPQET 242

Query: 245 SGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKELQS 304
             YVPKL+AL+ V++  E YG+++  I N P    V   ++LDL+  A +A +   EL  
Sbjct: 243 RDYVPKLLALSQVVSTPEAYGVNLTPIANEPYFEAVAINDRLDLSRVAAFANIDEDELIQ 302

Query: 305 FNPAYNQWATAPNGPHQLLIPVEKVERFNLAMEENRGKGIKVVR---------------- 348
            NPA+ +  T  +GP QLL+P  K +  + ++     + +  ++                
Sbjct: 303 LNPAFKKRMTV-DGPKQLLVPTAKAQLLSASLSNLNPEQLVSLQPPKAAFARAVAEAKAP 361

Query: 349 -----YKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALS 403
                Y+VK GD LS IA     + K IK  N+++ N +R G  L +        A    
Sbjct: 362 VGARSYRVKRGDNLSAIAKANRVSVKDIKRWNRLSGNSLRAGQVLALRGGSAPSAA---- 417

Query: 404 VSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKL 463
             NR+A +     G+    + V  G+SL+ +AK++NV  + L +WN  +   AL+ GQ L
Sbjct: 418 -GNRVAAS-----GKRSTQYKVRKGDSLYLVAKRFNVEMKHLKRWNPRS-GHALKPGQTL 470

Query: 464 VIW 466
            ++
Sbjct: 471 TVY 473



 Score = 55.5 bits (132), Expect = 4e-12
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 9/111 (8%)

Query: 422 THTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKDSKPTSGVIRTVT- 480
           ++ V  G++L  IAK   V  + + +WN ++  ++LR GQ L +   S P++   R    
Sbjct: 366 SYRVKRGDNLSAIAKANRVSVKDIKRWNRLSG-NSLRAGQVLALRGGSAPSAAGNRVAAS 424

Query: 481 ------YKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKLYV 525
                 YKVR GD+L  +A +F V+   + +WN   S   LK GQ L +Y+
Sbjct: 425 GKRSTQYKVRKGDSLYLVAKRFNVEMKHLKRWNP-RSGHALKPGQTLTVYL 474