Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., murein transglycosylase D from Escherichia coli ECRC62

 Score =  281 bits (719), Expect = 3e-80
 Identities = 151/403 (37%), Positives = 238/403 (59%), Gaps = 28/403 (6%)

Query: 75  DVWQRIAMQFKLGIPKDPSVDAQREWFLKNPGHLQAIASRAEPFLYLITEKVEQRGLPLE 134
           D+W  I  + K+GIP++  +  Q++ +L+N  +L  +  RAEP++Y I  +V++R +P+E
Sbjct: 12  DLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYMYWIAGQVKKRNMPME 71

Query: 135 LVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRRDVAAATDAALDYL 194
           LVLLPIVES+FDP A S  +AAG+WQ I STG+ YGLKQ   YD RRDV A+T AAL+ +
Sbjct: 72  LVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNYDARRDVVASTTAALNMM 131

Query: 195 TVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLDLPKETSGYVPKLIAL 254
             LN+ FDGDW   +AAYNSGEGRV +AIK NK  GK  DF+SL LP+ET  YVPK++AL
Sbjct: 132 QRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDFWSLPLPQETKQYVPKMLAL 191

Query: 255 ADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKELQSFNPAYNQWAT 314
           +D++ N ++YG+ +P  +    LA V     +++A  A  AG++V +L++FN        
Sbjct: 192 SDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVADMAGISVSKLKTFNAGVKGSTL 251

Query: 315 APNGPHQLLIPVEKVERFNLAMEENRGKGIKVVR-----------YKVKSGDTLSTIADK 363
             +GP  +++P +  ++   ++       ++              Y V+SGDTLS+IA +
Sbjct: 252 GASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRVYTVRSGDTLSSIASR 311

Query: 364 YNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNRLAKTQSVPRGQYQLTH 423
              + K +++ N++  ++++ G  L +          A S + RLA           +T+
Sbjct: 312 LGVSTKDLQQWNKLRGSKLKPGQSLTIG---------AGSSAQRLANNSD------SITY 356

Query: 424 TVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIW 466
            V  G+SL +IAK++ V  + + +WN       L+ G KL ++
Sbjct: 357 RVRKGDSLSSIAKRHGVNIKDVMRWNSDTAN--LQPGDKLTLF 397



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 3/183 (1%)

Query: 342 KGIKVVRYKVKSGDTLST-IADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAY 400
           K IK  + + KS D  S  +  +       +   + I  N  R G  L      +     
Sbjct: 158 KAIKTNKARGKSTDFWSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARV 217

Query: 401 ALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKG 460
            LS    +AK   +         T N+G    T+       Y  + K +    +++L  G
Sbjct: 218 HLSSPVEMAKVADMAGISVSKLKTFNAGVKGSTLGAS-GPQYVMVPKKHADQLRESLASG 276

Query: 461 QKLVIWKDSKPTSGVIRTVTYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQ 520
           +   +       +  + +  Y VRSGDTLS IA++  V T D+ +WN L  ++ LK GQ 
Sbjct: 277 EIAAVQSTLVADNTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSK-LKPGQS 335

Query: 521 LKL 523
           L +
Sbjct: 336 LTI 338