Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Dickeya dianthicola ME23

 Score = 55.1 bits (131), Expect = 7e-12
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 347 VRYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSN 406
           VR+ V +G+TLS IA  Y  +   I+EAN++  + + VG  L +P+        A +   
Sbjct: 434 VRHTVATGETLSGIAAHYGVSMGAIREANRLKKDVVWVGQRLKIPSGDLSAVKTASAAKR 493

Query: 407 R---LAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKL 463
           +    A +  V +    + H V  G++L  IA QY V  +++ + N M+    ++ GQ L
Sbjct: 494 KPVAAASSSGVKKSATVIKHKVARGDTLSAIASQYGVSMKAIQQANNMS-SGTVQLGQTL 552

Query: 464 VI 465
           +I
Sbjct: 553 II 554



 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 316 PNGPHQLLIPVEKVERFNLAMEENRG--KGIKVVRYKVKSGDTLSTIADKYNTTAKVIKE 373
           P+G    +      +R  +A   + G  K   V+++KV  GDTLS IA +Y  + K I++
Sbjct: 478 PSGDLSAVKTASAAKRKPVAAASSSGVKKSATVIKHKVARGDTLSAIASQYGVSMKAIQQ 537

Query: 374 ANQIASNQIRVGSYLFVPTS 393
           AN ++S  +++G  L +P++
Sbjct: 538 ANNMSSGTVQLGQTLIIPSA 557



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 21/109 (19%)

Query: 423 HTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKDS------------K 470
           HTV +GE+L  IA  Y V   ++ + N +  KD +  GQ+L I                K
Sbjct: 436 HTVATGETLSGIAAHYGVSMGAIREANRLK-KDVVWVGQRLKIPSGDLSAVKTASAAKRK 494

Query: 471 P-----TSGVIRTVT---YKVRSGDTLSGIANKFKVKTADIVKWNDLNS 511
           P     +SGV ++ T   +KV  GDTLS IA+++ V    I + N+++S
Sbjct: 495 PVAAASSSGVKKSATVIKHKVARGDTLSAIASQYGVSMKAIQQANNMSS 543



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 478 TVTYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKL 523
           TV + V +G+TLSGIA  + V    I + N L     +  GQ+LK+
Sbjct: 433 TVRHTVATGETLSGIAAHYGVSMGAIREANRLKK-DVVWVGQRLKI 477