Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Dickeya dianthicola 67-19

 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 18/129 (13%)

Query: 347 VRYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSN 406
           VR+ V +G+TLS IA  Y  +   I+EAN++  + + VG  L +P+         LS  N
Sbjct: 434 VRHTVATGETLSGIAAHYGVSMGAIREANRLKKDVVWVGQRLKIPSG-------DLSAVN 486

Query: 407 RLAKTQSVP----------RGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDA 456
             + T+S P          +    + H V  G++L  IA QY V  +++ + N M+    
Sbjct: 487 TASATKSKPVAAAPSSGAKKSATVIKHKVARGDTLSAIASQYGVSMKAIQQANNMS-SGT 545

Query: 457 LRKGQKLVI 465
           ++ GQ L+I
Sbjct: 546 VQLGQTLII 554



 Score = 48.5 bits (114), Expect = 6e-10
 Identities = 20/52 (38%), Positives = 35/52 (67%)

Query: 342 KGIKVVRYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTS 393
           K   V+++KV  GDTLS IA +Y  + K I++AN ++S  +++G  L +P++
Sbjct: 506 KSATVIKHKVARGDTLSAIASQYGVSMKAIQQANNMSSGTVQLGQTLIIPSA 557



 Score = 41.2 bits (95), Expect = 1e-07
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 21/109 (19%)

Query: 423 HTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKD-------------- 468
           HTV +GE+L  IA  Y V   ++ + N +  KD +  GQ+L I                 
Sbjct: 436 HTVATGETLSGIAAHYGVSMGAIREANRLK-KDVVWVGQRLKIPSGDLSAVNTASATKSK 494

Query: 469 ---SKPTSGVIRTVT---YKVRSGDTLSGIANKFKVKTADIVKWNDLNS 511
              + P+SG  ++ T   +KV  GDTLS IA+++ V    I + N+++S
Sbjct: 495 PVAAAPSSGAKKSATVIKHKVARGDTLSAIASQYGVSMKAIQQANNMSS 543



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 478 TVTYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKL 523
           TV + V +G+TLSGIA  + V    I + N L     +  GQ+LK+
Sbjct: 433 TVRHTVATGETLSGIAAHYGVSMGAIREANRLKK-DVVWVGQRLKI 477