Pairwise Alignments
Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056
Subject, 1017 a.a., hypothetical protein from Acinetobacter radioresistens SK82
Score = 229 bits (583), Expect = 5e-64
Identities = 120/276 (43%), Positives = 172/276 (62%), Gaps = 4/276 (1%)
Query: 53 LPAGETESVEEERVALTPQEQDDVWQRIAMQFKLGIPK-DPSVDAQREWFLKNPGHLQAI 111
L A + +VE +R+ + + DVW+R+ + FK+ + D ++AQR WF+ +L +
Sbjct: 67 LSATDMRAVEGDRLLIL--KHGDVWKRMTVGFKMDLNHWDSRIEAQRSWFISRQPYLDRL 124
Query: 112 ASRAEPFLYLITEKVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGL 171
++RA +LY ++ E+RGLP EL LLP++ESS+DP A S +AAGLWQFI STGK YGL
Sbjct: 125 SARASRYLYHTVKEAERRGLPTELALLPVIESSYDPAATSSAAAAGLWQFIPSTGKIYGL 184
Query: 172 KQNFWYDGRRDVAAATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGK 231
KQ YDGRRDV +T AA ++L L F G W A+AAYN+G GR+ +AI N+ AG
Sbjct: 185 KQTSLYDGRRDVVESTRAAYEFLGSLYNQF-GSWELALAAYNAGPGRIQQAINRNRAAGL 243
Query: 232 PIDFFSLDLPKETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIA 291
P D++SL LP+ET YVP+ +A+A +I N YG+S+P I NRP V+ + L
Sbjct: 244 PTDYWSLKLPQETMNYVPRFLAVAQIIKNPSAYGVSLPPIANRPHFREVNLNGGVGLNQV 303
Query: 292 ARYAGLTVKELQSFNPAYNQWATAPNGPHQLLIPVE 327
+ GL+ EL + NP + P P ++LIP +
Sbjct: 304 SSITGLSRAELYALNPGHRGEYVDPASPMRILIPAD 339
Score = 84.0 bits (206), Expect = 3e-20
Identities = 79/304 (25%), Positives = 141/304 (46%), Gaps = 46/304 (15%)
Query: 242 KETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKE 301
+E + P L A + ++ Q I++P +E V A V+ KE + T +
Sbjct: 735 QELADLTPGLTATSSLLVGQR---INVP-VEETSVSAKVETKEDKKTTLNDNIKVSTNYK 790
Query: 302 LQSFNPAYNQWATAPNGPHQLLIPVEKVERFNLAMEENRGKGIKVVR------------- 348
+S+ T+ Q + V ++ + N N G G+++ +
Sbjct: 791 TESYKVQRGDTLTSIAA--QSKVSVSELAQLN---NINTGSGVRIGQTLKVPAGASMPDE 845
Query: 349 YKVKSGDTLSTIADKYNTTAKVIKEANQIASNQ-IRVGSYLFV-------PTSVKDEKAY 400
Y V+ GDTL+++A KY+ + N + N +RVG + + P V+ E
Sbjct: 846 YIVQPGDTLTSVAGKYHLQVNFLAGLNGLNRNSGLRVGQKIKLDGELPVSPAPVEKE--- 902
Query: 401 ALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKG 460
+V+ + +K S + +TV +GESL TIA + + + LA+ N + + L +G
Sbjct: 903 --TVTAKNSKNNSSGSHRDTERYTVKNGESLNTIASRVGISVKELAELNNLESRAGLLRG 960
Query: 461 QKLVIWKDSKPTSGVIRTVT-YKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQ 519
Q L+I K TVT Y V+ GDTL G+ANK+ + T+++ + ND+ + L+ G+
Sbjct: 961 QNLLIPK----------TVTSYTVKRGDTLIGLANKYGMNTSELAEMNDIQPSTQLRIGE 1010
Query: 520 QLKL 523
+K+
Sbjct: 1011 VIKV 1014
Score = 71.6 bits (174), Expect = 1e-16
Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 25/210 (11%)
Query: 336 MEENRGKGIKVVRYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVK 395
+EE K K Y VK+ D+L+++AD++ + K + + N ++ + G ++ +K
Sbjct: 630 VEEKTVKASKPETYLVKANDSLTSVADQFGLSLKQLADWNNLS---VTSGLFVGQKLQLK 686
Query: 396 DEKAYALSVSNRLAKTQSVPRGQYQL-THTVNSGESLWTIAKQYNVPYQSLAKWN-GMAP 453
D A++ ++A T+ + + ++TV GE L IA++Y + Q LA G+
Sbjct: 687 DNPNAAVAKPVKVADTRVTAEQRIKTKSYTVKRGEYLKMIAERYALSNQELADLTPGLTA 746
Query: 454 KDALRKGQKL------------VIWKDSKPT--------SGVIRTVTYKVRSGDTLSGIA 493
+L GQ++ V K+ K T S +T +YKV+ GDTL+ IA
Sbjct: 747 TSSLLVGQRINVPVEETSVSAKVETKEDKKTTLNDNIKVSTNYKTESYKVQRGDTLTSIA 806
Query: 494 NKFKVKTADIVKWNDLNSTQYLKAGQQLKL 523
+ KV +++ + N++N+ ++ GQ LK+
Sbjct: 807 AQSKVSVSELAQLNNINTGSGVRIGQTLKV 836
Score = 64.3 bits (155), Expect = 2e-14
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 415 PRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKDSKPTSG 474
P+G+ + T+TV G++L IA + V ++ +AKWN + P L G L ++ D+ P
Sbjct: 573 PKGK-RSTYTVQPGDTLAVIAMKNGVSWRDVAKWNQIDPSATLYVGTSLYLY-DANPQKV 630
Query: 475 VIRTV------TYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKL 523
+TV TY V++ D+L+ +A++F + + WN+L+ T L GQ+L+L
Sbjct: 631 EEKTVKASKPETYLVKANDSLTSVADQFGLSLKQLADWNNLSVTSGLFVGQKLQL 685
Score = 63.9 bits (154), Expect = 3e-14
Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 63/287 (21%)
Query: 279 TVDPKEQLDLAIAARYAGLTVKELQSFNPAYNQWATAPNGPHQLLIPVEKVERFNLAMEE 338
TV E L + IA RYA L+ +EL P ++ G ++ +PVE+ + +E
Sbjct: 716 TVKRGEYLKM-IAERYA-LSNQELADLTPGLTATSSLLVG-QRINVPVEETS-VSAKVET 771
Query: 339 NRGK------------GIKVVRYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQ-IRVG 385
K K YKV+ GDTL++IA + + + + N I + +R+G
Sbjct: 772 KEDKKTTLNDNIKVSTNYKTESYKVQRGDTLTSIAAQSKVSVSELAQLNNINTGSGVRIG 831
Query: 386 SYLFVPT--SVKDEKAYALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQ 443
L VP S+ DE + V G++L ++A +Y++
Sbjct: 832 QTLKVPAGASMPDE-------------------------YIVQPGDTLTSVAGKYHLQVN 866
Query: 444 SLAKWNGMAPKDALRKGQKL-----------------VIWKDSKP-TSGVIR-TVTYKVR 484
LA NG+ LR GQK+ V K+SK +SG R T Y V+
Sbjct: 867 FLAGLNGLNRNSGLRVGQKIKLDGELPVSPAPVEKETVTAKNSKNNSSGSHRDTERYTVK 926
Query: 485 SGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKLYVDVTKFS 531
+G++L+ IA++ + ++ + N+L S L GQ L + VT ++
Sbjct: 927 NGESLNTIASRVGISVKELAELNNLESRAGLLRGQNLLIPKTVTSYT 973
Score = 62.0 bits (149), Expect = 1e-13
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 30/201 (14%)
Query: 349 YKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNRL 408
Y V+ GDTL+ IA K + + + + NQI + + L+V TS+ A V +
Sbjct: 580 YTVQPGDTLAVIAMKNGVSWRDVAKWNQIDPS-----ATLYVGTSLYLYDANPQKVEEKT 634
Query: 409 AKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKD 468
K S P T+ V + +SL ++A Q+ + + LA WN ++ L GQKL + KD
Sbjct: 635 VKA-SKPE-----TYLVKANDSLTSVADQFGLSLKQLADWNNLSVTSGLFVGQKLQL-KD 687
Query: 469 SKPTSGV----------------IRTVTYKVRSGDTLSGIANKFKVKTADIVKWN-DLNS 511
+ P + V I+T +Y V+ G+ L IA ++ + ++ L +
Sbjct: 688 N-PNAAVAKPVKVADTRVTAEQRIKTKSYTVKRGEYLKMIAERYALSNQELADLTPGLTA 746
Query: 512 TQYLKAGQQLKLYVDVTKFSA 532
T L GQ++ + V+ T SA
Sbjct: 747 TSSLLVGQRINVPVEETSVSA 767
Score = 40.4 bits (93), Expect = 3e-07
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 454 KDALRKGQKLVIWKDSKPTSGVIRTVTYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQ 513
KD ++ ++V+ P G + TY V+ GDTL+ IA K V D+ KWN ++ +
Sbjct: 559 KDYIKTDSEIVVI----PPKG--KRSTYTVQPGDTLAVIAMKNGVSWRDVAKWNQIDPSA 612
Query: 514 YLKAGQQLKLY 524
L G L LY
Sbjct: 613 TLYVGTSLYLY 623