Pairwise Alignments

Query, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

Subject, 240 a.a., DNA polymerase III epsilon subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  202 bits (514), Expect = 5e-57
 Identities = 108/238 (45%), Positives = 160/238 (67%), Gaps = 10/238 (4%)

Query: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEV 70
           R++VLDTETTG++ E G      R+IE+G VE+ NRKLTG   H+Y  P+R+   +A++V
Sbjct: 3   RLIVLDTETTGLSAENGD-----RVIELGCVELFNRKLTGNDLHIYFNPERESHEDALKV 57

Query: 71  HGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFC 130
           HG+T +FL+DKP++  +  + V++++ AEL+ HNA FDVGF++ EF + G    +T    
Sbjct: 58  HGLTTDFLRDKPKFATLANDIVEYLRDAELIIHNAAFDVGFLNKEFERAGFPPLRTF-VA 116

Query: 131 KVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
           +VTDTLAMAK ++PGKRN+LD LC+R+G+D S+RT HGA LDA++LADVY+ +T GQ +L
Sbjct: 117 EVTDTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDAL 176

Query: 191 QFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAKS--GTCLWR 246
               V  +  E+    +    S+ + L V+ A+  EL AH+  L  + KS  G  L+R
Sbjct: 177 -LIDVASSEPEVGTAVVAMDLSQFE-LPVILAAEQELAAHEGVLAQLDKSSGGRTLFR 232