Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., rRNA pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 12/234 (5%)

Query: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVCIDGKPLRSKERPIY 79
           +L K I+  GY SR++  +L   GR+T    +      V     + +D +PL      + 
Sbjct: 2   KLVKLIANLGYGSRKDVTQLFRSGRITDADGEVLYADDVVPYGTIRVDDEPL-DPPPGLT 60

Query: 80  IALNKPTGITCTTERDVPGNIV-DFIGHHKRI-----FPIGRLDKPSDGLIFLTNDGDIV 133
           + ++KP G+TC+  R  PG +V D +    R+       +GRLD+ + GL+  T+DG ++
Sbjct: 61  LMMHKPLGVTCS--RKDPGRVVYDLLPPRYRVRTPALSTVGRLDRDTSGLLLFTDDGALL 118

Query: 134 NKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLP-CKVTQETQYS--FRIV 190
           ++I+    N  K Y   + + +  +     +SG  +L+  T P      E   S   R+ 
Sbjct: 119 HRIISPKANVTKVYEATLAQDLRGDEGELFASGTLMLEEETTPLAPAALEVLGSRHARLG 178

Query: 191 LTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEILA 244
           +++G   Q+RRM  A G  V  L+RV I  +TL G+  G+WR L  AEV+ I A
Sbjct: 179 VSEGRYHQVRRMFAAAGNHVETLQRVSIGALTLGGLAPGEWRALDAAEVALIFA 232