Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., rRNA pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score =  103 bits (258), Expect = 4e-27
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 12/239 (5%)

Query: 14  SQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNG--LQPEVGSKVTEQDEVCIDGKPL 71
           +Q     L + +S+ G CSR +A++ +  GRV+L+G  ++      + ++ +V +DG+P+
Sbjct: 16  AQQPRHGLARVLSKLGACSRSQAEQWVRAGRVSLDGRVVRDPYHPTLIDRQQVAVDGQPV 75

Query: 72  RSKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHKR----IFPIGRLDKPSDGLIFLT 127
           +S  + +Y+A NKP G+  +   D  G    +          + P+GRLDK S+GL+ L+
Sbjct: 76  KSA-KCVYVAFNKPRGLVVSAA-DEHGRATVYTTLAAAGLPWLGPVGRLDKASEGLLLLS 133

Query: 128 NDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVN----ILDTVTLPCKVTQET 183
           ND      I     + +K Y V+V        +  M +G++    +L    +    T E 
Sbjct: 134 NDTVWAAGITNPATHLDKTYHVQVSGLPDTAVLAAMLAGIDDAGDLLKARRVALLRTGEK 193

Query: 184 QYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAEVSEI 242
                +VL +G NR IRR+  ALG++V +L RV I  + L  +  G+WR LS  EV  +
Sbjct: 194 NAWLEMVLDEGRNRHIRRLLAALGFDVLRLIRVSIGPLALGELAKGQWRQLSADEVGAL 252