Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score =  103 bits (257), Expect = 9e-27
 Identities = 80/271 (29%), Positives = 130/271 (47%), Gaps = 22/271 (8%)

Query: 3   TIRCETLGDCMSQPTEKRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQD 62
           +++ E   D  +   E+RL+K ++  G  SRR  ++ I+ G V LNG    +G  V   D
Sbjct: 10  SLKREPRADSDAPALEERLHKVLANAGLGSRRMLEQRIQSGEVELNGAPASIGMSVKSGD 69

Query: 63  EVCIDGKPL----RSKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIG 114
            V +DGK       S++    +  +KP G   TT  D  G    F    +    R   +G
Sbjct: 70  RVIMDGKQFVVATDSRDDTEVLIYHKPEG-ELTTREDPEGRPTVFEQLPRLKGARWVAVG 128

Query: 115 RLDKPSDGLIFLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVT 174
           RLD  + GL+ LT DG++ N ++   +  E+EY+ RV   +  E I ++ +GV + D   
Sbjct: 129 RLDINTTGLLLLTTDGELANALMHPKSGLEREYLCRVHGEVPDEVIEKLKAGVELDDG-- 186

Query: 175 LPCKVTQETQYS-------FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIP 227
            P +  +    S       FR+V+ +G NR++RR+ ++ G+ V +L+R+R   I L   P
Sbjct: 187 -PARFDEIAVISRGGSHSWFRVVIREGRNREVRRLWDSQGFLVSRLKRIRYGGIEL---P 242

Query: 228 NGKWRYLSEAEVSEILAMCEDSSGTEEASRV 258
               R   EA  +E +     +SG   A  V
Sbjct: 243 RHLRRGECEALDAEGVKQLRQTSGLGPAQPV 273