Pairwise Alignments

Query, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 74/225 (32%), Positives = 104/225 (46%), Gaps = 13/225 (5%)

Query: 15  QPTEKRLNKFISETGYCSRREADKLIEQGRVTLNG---LQPEVGSKVTEQDEVCIDGKPL 71
           Q   +R+ K ++  G  SRRE ++ IE GRV +NG     P V   VT  D + IDG+PL
Sbjct: 26  QKEAERVAKVVARAGLGSRREIEEWIEAGRVAVNGEVLTSPAV--TVTPADAITIDGEPL 83

Query: 72  RSKERPIYIALNKPTGITCTTERDVPGNIVDFIGHHK---RIFPIGRLDKPSDGLIFLTN 128
             +ER      +KP G+  TT RD  G    F    K   R+  +GRLD  S+GL+ LTN
Sbjct: 84  PERERTRLFLYHKPKGVV-TTNRDPEGRTTLFEILPKGLPRLVSVGRLDLNSEGLLLLTN 142

Query: 129 DGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKV----TQETQ 184
           DG +   +        + Y VR +  I    +  +  G+ +      P +      Q   
Sbjct: 143 DGGLARVLELPETGWLRRYRVRANGEIDQAKLDTLIKGITVDGVEYGPIEAELDRVQGAN 202

Query: 185 YSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNG 229
               + L +G NR+IR +  ALG  V +L RV      L  IP G
Sbjct: 203 AWITVSLREGKNREIRNVFGALGLAVNRLIRVSYGPFQLGEIPEG 247